Factsheet for GSMUA_Achr4P22340_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	91.01	90.67
TraesCS2D01G001300.1	Wheat	plasma membrane	74.16	77.65
TraesCS2A01G001100.1	Wheat	plasma membrane	74.16	77.65
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	76.03	76.03
KXG24074	Sorghum	plasma membrane	75.66	75.66
TraesCS2D01G595700.1	Wheat	plasma membrane	68.54	75.62
TraesCS2B01G022800.1	Wheat	plasma membrane	76.03	75.46
Zm00001d012393_P004	Maize	extracellular	75.28	74.44
Os04t0165400-01	Rice	cytosol	77.15	73.57
PGSC0003DMT400048758	Potato	plastid	73.03	73.03
KRH18296	Soybean	endoplasmic reticulum	73.41	72.86
KRG93809	Soybean	plastid	72.66	72.12
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	72.66	72.12
PGSC0003DMT400051743	Potato	plastid	72.66	72.12
CDY52184	Canola	plastid	72.28	71.48
Bra039874.1-P	Field mustard	plastid	70.79	71.32
CDY12450	Canola	plasma membrane	71.54	70.74
CDX67799	Canola	plasma membrane	70.79	70.26
CDX89024	Canola	plasma membrane	69.66	69.92
CDX98378	Canola	plasma membrane	70.41	69.89
CDY00621	Canola	plastid	68.54	69.58
Bra014538.1-P	Field mustard	plastid	69.29	69.55
AT3G59500.1	Thale cress	plasma membrane	70.04	69.52
Bra003379.1-P	Field mustard	plastid	70.79	69.49
KRH45179	Soybean	plastid	70.04	68.5
PGSC0003DMT400091443	Potato	cytosol	31.09	66.94
Solyc06g083630.2.1	Tomato	plastid	72.66	66.21
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	76.03	60.24
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	41.57	59.68
VIT_11s0037g00310.t01	Wine grape	cytosol	60.67	59.56
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	73.03	56.69
CDY05995	Canola	plasma membrane	38.2	56.04
Solyc07g005670.1.1	Tomato	extracellular	56.93	55.88
CDX71903	Canola	plastid	34.08	53.53
KRH01468	Soybean	plasma membrane	70.04	47.83

Protein Annotations

EnsemblPlants:GSMUA_Achr4P22340_001	EnsemblPlants:GSMUA_Achr4T22340_001	EnsemblPlantsGene:GSMUA_Achr4G22340_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Yif1_fam	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	PFAM:PF03878	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296F8D2	UniProt:M0SR47	MapMan:35.2	:	:	:

Description

Putative Protein YIF1B-B [Source:GMGC_GENE;Acc:GSMUA_Achr4G22340_001]

Coordinates

chr4:+:22659724..22665543

Molecular Weight (calculated)

30191.1 Da

IEP (calculated)

9.710

GRAVY (calculated)

0.224

Length

267 amino acids

Sequence
(BLAST)

001: MYNNLGNQAG VQGPTINPQP NPFGDALYGA GSGLIRGSLG AYGERFLGSS SEFMQSNISR YFSNPQYYFQ VNDQYVRNKL KVILFPFLHR GHWTRITEPV
101: GGRLSYKPPV YDINAPDLYI PFMAFGTYII LAGFLFGLLG KFSPEALSLQ FTRGLAGWFL QVLILKGLLY SLGGGEAPLL DIVAYGGYAF TGMSLTMLAR
201: LCWSYTYYFL MPWMSLCMGV FLVKTMKRVL FTEMRSYEKH SSRQHYLLLF MAIAQFPLFF WLGKIAA

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.