CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67799	Canola	plasma membrane	98.88	98.88
Bra003379.1-P	Field mustard	plastid	98.88	97.79
AT3G59500.1	Thale cress	plasma membrane	94.8	94.8
CDY00621	Canola	plastid	91.08	93.16
CDX89024	Canola	plasma membrane	91.82	92.86
CDY52184	Canola	plastid	86.99	86.67
CDY12450	Canola	plasma membrane	86.62	86.3
KRH18296	Soybean	endoplasmic reticulum	82.53	82.53
KRG93809	Soybean	plastid	81.78	81.78
PGSC0003DMT400048758	Potato	plastid	79.93	80.52
PGSC0003DMT400051743	Potato	plastid	80.3	80.3
KRH45179	Soybean	plastid	81.04	79.85
Solyc06g083630.2.1	Tomato	plastid	80.3	73.72
CDX71903	Canola	plastid	46.47	73.53
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	71.38	71.64
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	69.89	70.41
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	67.29	67.79
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	67.29	67.79
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	67.29	67.79
CDY05995	Canola	plasma membrane	45.72	67.58
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	66.91	67.42
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	84.01	67.06
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	66.17	66.67
EES04687	Sorghum	cytosol, plasma membrane, plastid	65.43	65.92
TraesCS7B01G300300.1	Wheat	plasma membrane	65.06	65.54
KXG24074	Sorghum	plasma membrane	65.06	65.54
TraesCS7A01G400200.1	Wheat	plasma membrane	64.68	65.17
TraesCS7D01G394000.1	Wheat	plasma membrane	64.31	64.79
EER93147	Sorghum	cytosol, plasma membrane, plastid	64.31	64.79
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	63.94	64.42
TraesCS2A01G001100.1	Wheat	plasma membrane	60.97	64.31
TraesCS2D01G001300.1	Wheat	plasma membrane	60.97	64.31
Os04t0165400-01	Rice	cytosol	66.91	64.29
TraesCS2B01G022800.1	Wheat	plasma membrane	63.57	63.57
Zm00001d012393_P004	Maize	extracellular	63.57	63.33
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	79.93	62.5
TraesCS2D01G595700.1	Wheat	plasma membrane	56.13	62.4
HORVU1Hr1G028870.1	Barley	plastid	35.32	61.69
KRH01468	Soybean	plasma membrane	80.3	55.24
HORVU7Hr1G094050.2	Barley	cytosol	26.77	54.55
Zm00001d053686_P001	Maize	cytosol	65.43	53.5
HORVU7Hr1G094010.8	Barley	mitochondrion	65.06	51.62

Protein Annotations

EnsemblPlants:CDX98378	EnsemblPlantsGene:GSBRNA2T00105948001	GO:A0A078EG88	InterPro:Yif1_fam	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6
PFAM:PF03878	ProteinID:CDX98378	ProteinID:CDX98378.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE19A6
MapMan:35.2	:	:	:	:	:

Description

BnaC06g17390D

Coordinates

chrLK031904:+:938154..939902

Molecular Weight (calculated)

30027.9 Da

IEP (calculated)

9.391

GRAVY (calculated)

0.304

Length

269 amino acids

Sequence
(BLAST)

001: MYNNMGPQPG MPMPQAVPQP NPFGNAFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNITR YFSDPQYYFQ VNDQYVRNKL KVVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFSPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYAL LPWTCLCSGV FLVKTMKRVL YAEARSSDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)

001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Arabidopsis Description

HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.