Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52184 | Canola | plastid | 98.52 | 98.52 |
| AT1G30890.1 | Thale cress | cytosol, plasma membrane, plastid | 94.81 | 95.17 |
| CDX67799 | Canola | plasma membrane | 86.67 | 86.99 |
| CDX98378 | Canola | plasma membrane | 86.3 | 86.62 |
| CDY00621 | Canola | plastid | 83.7 | 85.93 |
| CDX89024 | Canola | plasma membrane | 84.07 | 85.34 |
| PGSC0003DMT400051743 | Potato | plastid | 80.74 | 81.04 |
| PGSC0003DMT400048758 | Potato | plastid | 80.0 | 80.9 |
| KRH18296 | Soybean | endoplasmic reticulum | 79.26 | 79.55 |
| KRG93809 | Soybean | plastid | 78.52 | 78.81 |
| KRH45179 | Soybean | plastid | 79.26 | 78.39 |
| Solyc06g083630.2.1 | Tomato | plastid | 80.37 | 74.06 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 71.48 | 72.01 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 70.74 | 71.54 |
| CDX71903 | Canola | plastid | 42.96 | 68.24 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 66.67 | 67.42 |
| TraesCS6A01G167600.1 | Wheat | cytosol, plasma membrane, plastid | 66.67 | 67.42 |
| HORVU6Hr1G034030.2 | Barley | cytosol, plasma membrane, plastid | 66.67 | 67.42 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 66.3 | 67.04 |
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 62.96 | 66.67 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 62.96 | 66.67 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 82.59 | 66.17 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 59.26 | 66.12 |
| KXG24074 | Sorghum | plasma membrane | 65.19 | 65.92 |
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 65.19 | 65.92 |
| Os04t0165400-01 | Rice | cytosol | 68.15 | 65.71 |
| Zm00001d012393_P004 | Maize | extracellular | 65.19 | 65.19 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 64.44 | 65.17 |
| EER93147 | Sorghum | cytosol, plasma membrane, plastid | 64.44 | 65.17 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 64.44 | 65.17 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 64.81 | 65.06 |
| CDY05995 | Canola | plasma membrane | 43.33 | 64.29 |
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 62.22 | 62.92 |
| TraesCS7B01G300300.1 | Wheat | plasma membrane | 62.22 | 62.92 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 61.85 | 62.55 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 79.63 | 62.5 |
| HORVU1Hr1G028870.1 | Barley | plastid | 34.07 | 59.74 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 27.78 | 56.82 |
| KRH01468 | Soybean | plasma membrane | 78.89 | 54.48 |
| Zm00001d053686_P001 | Maize | cytosol | 65.19 | 53.5 |
| HORVU7Hr1G094010.8 | Barley | mitochondrion | 62.59 | 49.85 |
Protein Annotations
| EnsemblPlants:CDY12450 | EnsemblPlantsGene:GSBRNA2T00061731001 | GO:A0A078FDI9 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Yif1_fam | PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 | PFAM:PF03878 | ProteinID:CDY12450 | ProteinID:CDY12450.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EB6CDA | UniProt:A0A078FDI9 | MapMan:35.2 | : |
Description
BnaC08g09390DBnaC08g09390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDI9]
Coordinates
chrLK032022:-:659035..660658
Molecular Weight (calculated)
30104.9 Da
IEP (calculated)
9.296
GRAVY (calculated)
0.263
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MYNNNMGPQP GMPRPPGNPQ PGPFGNPFTG PASGFIRGGL GAYGERILGS SSEYVQSNIT RYFSDPQYYF QVNDQYVRNK LKVVLFPFLH RGHWARISEP
101: VGGRLSYKPP IYDINAPDLY IPFMAFGTYV VLAGLSLGLD GKFSPEALNW LFVKGLVGWF LQVMLLKVTL LSLGSAEAPL LDIAAYGGYA FAGLCLAGFA
201: KIMWGYSYYA LMPCTCLCTG VFLVKTMKRV LFAEVRSYDS SRHHYLLLFL ALVQFPLLIW LGNISVNWLF
101: VGGRLSYKPP IYDINAPDLY IPFMAFGTYV VLAGLSLGLD GKFSPEALNW LFVKGLVGWF LQVMLLKVTL LSLGSAEAPL LDIAAYGGYA FAGLCLAGFA
201: KIMWGYSYYA LMPCTCLCTG VFLVKTMKRV LFAEVRSYDS SRHHYLLLFL ALVQFPLLIW LGNISVNWLF
001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
Arabidopsis Description
Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.