Factsheet for VIT_05s0102g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 3
plasma membrane 4
extracellular 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	67.95	85.13
AT3G59500.1	Thale cress	plasma membrane	67.66	84.76
KRH18296	Soybean	endoplasmic reticulum	67.36	84.39
CDX67799	Canola	plasma membrane	67.36	84.39
CDX98378	Canola	plasma membrane	67.06	84.01
KRG93809	Soybean	plastid	66.77	83.64
Bra003379.1-P	Field mustard	plastid	67.36	83.46
KRH45179	Soybean	plastid	67.36	83.15
Bra039874.1-P	Field mustard	plastid	65.28	83.02
CDY52184	Canola	plastid	66.47	82.96
PGSC0003DMT400048758	Potato	plastid	65.58	82.77
CDY12450	Canola	plasma membrane	66.17	82.59
PGSC0003DMT400051743	Potato	plastid	65.58	82.16
CDY00621	Canola	plastid	64.09	82.13
CDX89024	Canola	plasma membrane	63.8	80.83
Bra014538.1-P	Field mustard	plastid	63.5	80.45
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	60.83	76.49
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	60.24	76.03
Solyc06g083630.2.1	Tomato	plastid	65.88	75.77
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	54.9	69.29
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	54.9	69.29
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	54.9	69.29
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	54.6	68.91
TraesCS2A01G001100.1	Wheat	plasma membrane	51.93	68.63
TraesCS2D01G001300.1	Wheat	plasma membrane	51.93	68.63
TraesCS2D01G595700.1	Wheat	plasma membrane	48.66	67.77
KXG24074	Sorghum	plasma membrane	53.41	67.42
Os04t0165400-01	Rice	cytosol	55.79	67.14
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	53.12	67.04
TraesCS2B01G022800.1	Wheat	plasma membrane	53.41	66.91
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	52.82	66.67
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	67.36	65.99
Zm00001d012393_P004	Maize	extracellular	52.82	65.93
EES04687	Sorghum	cytosol, plasma membrane, plastid	51.93	65.54
EER93147	Sorghum	cytosol, plasma membrane, plastid	51.63	65.17
TraesCS7A01G400200.1	Wheat	plasma membrane	51.63	65.17
TraesCS7B01G300300.1	Wheat	plasma membrane	51.63	65.17
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	35.91	65.05
TraesCS7D01G394000.1	Wheat	plasma membrane	51.34	64.79
CDX71903	Canola	plastid	32.64	64.71
HORVU1Hr1G028870.1	Barley	plastid	27.89	61.04
CDY05995	Canola	plasma membrane	32.34	59.89
KRH01468	Soybean	plasma membrane	68.84	59.34
VIT_11s0037g00310.t01	Wine grape	cytosol	46.29	57.35
HORVU7Hr1G094050.2	Barley	cytosol	21.96	56.06
Zm00001d053686_P001	Maize	cytosol	53.41	54.71
HORVU7Hr1G094010.8	Barley	mitochondrion	52.82	52.51

Protein Annotations

EntrezGene:100262723	wikigene:100262723	MapMan:35.2	ProteinID:CBI36691	ProteinID:CBI36691.3	UniProt:D7U1S5
EMBL:FN596500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0005793	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030134	GO:GO:0030173	EntrezGene:LOC100262723	wikigene:LOC100262723
PFAM:PF03878	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	SignalP:SignalP-noTM	TIGR:TC68831	TMHMM:TMhelix
UniParc:UPI0001BE48E1	ArrayExpress:VIT_05s0102g00730	EnsemblPlantsGene:VIT_05s0102g00730	EnsemblPlants:VIT_05s0102g00730.t01	RefSeq:XP_002268449	RefSeq:XP_002268449.2
InterPro:Yif1_fam	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:22635813..22642499

Molecular Weight (calculated)

37282.4 Da

IEP (calculated)

9.294

GRAVY (calculated)

0.260

Length

337 amino acids

Sequence
(BLAST)

001: MWHVVIGCFY CFLEAQIAGK GIGGRPNSDQ SSRIHATHFA RTATDSALQF LRTQDMYNNN VGSQGGVGVG IGVGVGPGMG PAANPQPNNP FGNAFYGAGS
101: GLIRGGLGAY GEKILGSSSE YVQSNISRYF SDPQYYFQVN DHYVRNKLKV VLFPFLHRGH WTRITEPVGG RLSYKPPIYD INAPDLYIPF MAFGTYVILA
201: GLSLGLRGKF TPEALNWLFI KGLVGWCLQV SLLKVSLLSL GSGEAPLLDI VAYAGYTFTG MCLAVFGRIA WSYSYYFLMP WACLCMGIFL VKTMKRVLFA
301: EVRSYDSSRH HYLLLFIALA QLPLFIWLGN ISVHWLF

Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)

001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Arabidopsis Description

HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.