Factsheet for VIT_11s0037g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400091443	Potato	cytosol	33.09	72.58
Solyc07g005670.1.1	Tomato	extracellular	65.07	65.07
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	59.56	60.67
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	57.72	58.58
EES04687	Sorghum	cytosol, plasma membrane, plastid	55.15	56.18
EER93147	Sorghum	cytosol, plasma membrane, plastid	55.15	56.18
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	54.41	55.43
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	53.68	54.68
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	53.68	54.68
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	53.68	54.68
HORVU1Hr1G028870.1	Barley	plastid	30.88	54.55
TraesCS7A01G400200.1	Wheat	plasma membrane	53.31	54.31
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	53.31	54.31
TraesCS2A01G001100.1	Wheat	plasma membrane	50.74	54.12
TraesCS2D01G001300.1	Wheat	plasma membrane	50.74	54.12
TraesCS7B01G300300.1	Wheat	plasma membrane	52.94	53.93
TraesCS7D01G394000.1	Wheat	plasma membrane	52.94	53.93
TraesCS2D01G595700.1	Wheat	plasma membrane	47.43	53.31
Os04t0165400-01	Rice	cytosol	54.04	52.5
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	51.47	52.43
TraesCS2B01G022800.1	Wheat	plasma membrane	51.84	52.42
Zm00001d012393_P004	Maize	extracellular	51.47	51.85
KXG24074	Sorghum	plasma membrane	50.74	51.69
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	57.35	46.29
Zm00001d053686_P001	Maize	cytosol	54.41	44.98
HORVU7Hr1G094050.2	Barley	cytosol	21.69	44.7
HORVU7Hr1G094010.8	Barley	mitochondrion	53.68	43.07

Protein Annotations

EntrezGene:100260327	wikigene:100260327	MapMan:35.2	ProteinID:CBI36537	ProteinID:CBI36537.3	UniProt:D7U1C1
EMBL:FN596499	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0005793	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030134	GO:GO:0030173	EntrezGene:LOC100260327	wikigene:LOC100260327
PFAM:PF03878	PANTHER:PTHR14083	PANTHER:PTHR14083:SF3	TMHMM:TMhelix	UniParc:UPI00015C9A30	ArrayExpress:VIT_11s0037g00310
EnsemblPlantsGene:VIT_11s0037g00310	EnsemblPlants:VIT_11s0037g00310.t01	RefSeq:XP_002275706	RefSeq:XP_002275706.1	RefSeq:XP_019078687.1	InterPro:Yif1_fam
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:8118148..8119480

Molecular Weight (calculated)

30064.8 Da

IEP (calculated)

7.824

GRAVY (calculated)

0.323

Length

272 amino acids

Sequence
(BLAST)

001: MYEKVCVPQS CQHTNTFGGM SIPQASPFGE ALSGAGSHLL KTELGACGER ILGSGSAYMQ TNIGRYFSNP HYYFQVNDEY VKNKLKVILF PFLHRGHWMR
101: TNEASGGEFS FKPPIYDINA PDLYIPLMAF GTNLVLAGFF LGINGKFSPE ALGMQFSDGL LGWFLEVLLL EATLHSLGGG DVPILDVVAY GGYTFTPLSV
201: VLLAKIVSSY CFYAVTLWGC FCTGVFLVKT IKRILIAEVT SYEKNSSKRN YLLLLVAMTQ LPLLFWLGNI RV

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.