Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400091443 | Potato | cytosol | 40.07 | 87.9 |
| VIT_11s0037g00310.t01 | Wine grape | cytosol | 65.07 | 65.07 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 56.25 | 57.09 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 55.88 | 56.93 |
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 51.84 | 55.29 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 51.84 | 55.29 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 54.04 | 55.06 |
| TraesCS7B01G300300.1 | Wheat | plasma membrane | 53.68 | 54.68 |
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 53.31 | 54.31 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 52.94 | 53.93 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 52.57 | 53.56 |
| HORVU6Hr1G034030.2 | Barley | cytosol, plasma membrane, plastid | 52.57 | 53.56 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 52.57 | 53.56 |
| TraesCS6A01G167600.1 | Wheat | cytosol, plasma membrane, plastid | 52.57 | 53.56 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 52.21 | 52.79 |
| HORVU1Hr1G028870.1 | Barley | plastid | 29.78 | 52.6 |
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 51.47 | 52.43 |
| Os04t0165400-01 | Rice | cytosol | 53.31 | 51.79 |
| EER93147 | Sorghum | cytosol, plasma membrane, plastid | 50.74 | 51.69 |
| Zm00001d012393_P004 | Maize | extracellular | 51.1 | 51.48 |
| KXG24074 | Sorghum | plasma membrane | 50.37 | 51.31 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 45.59 | 51.24 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 50.0 | 50.94 |
| Solyc06g083630.2.1 | Tomato | plastid | 54.41 | 50.51 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 56.99 | 45.06 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 21.32 | 43.94 |
| HORVU7Hr1G094010.8 | Barley | mitochondrion | 53.68 | 43.07 |
| Zm00001d053686_P001 | Maize | cytosol | 50.74 | 41.95 |
Protein Annotations
| MapMan:35.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005793 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030134 | GO:GO:0030173 | UniProt:K4CB38 | PFAM:PF03878 |
| PANTHER:PTHR14083 | PANTHER:PTHR14083:SF3 | EnsemblPlantsGene:Solyc07g005670.1 | EnsemblPlants:Solyc07g005670.1.1 | TMHMM:TMhelix | UniParc:UPI000276BFC1 |
| InterPro:Yif1_fam | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:551474..553674
Molecular Weight (calculated)
30686.9 Da
IEP (calculated)
9.000
GRAVY (calculated)
0.357
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTMYETSQ YHKKTCTKQI DTSFGNMLLF GAGSDLIKNE LGAYGEKVLG SSSAYVQSNI GRYISNPQYY FQVNESYVKN KLKVILFPFL HKGHWMRTGH
101: MARGEFSFKP PIYDINAPDL YIPMMAFGTY LVLAGYFLGI TTKFSPEALG VQFTTGLLCW LLQILLLEAT LHSLGSGEVP LLDIVAYSGY IFVNASIILL
201: CRVIWDYAFY IVTIFECFCV GVFLIKTMKR ILIGEVRTFE KHSTKRNYLL LLMALSQIPL LFWLGNVGVG AK
101: MARGEFSFKP PIYDINAPDL YIPMMAFGTY LVLAGYFLGI TTKFSPEALG VQFTTGLLCW LLQILLLEAT LHSLGSGEVP LLDIVAYSGY IFVNASIILL
201: CRVIWDYAFY IVTIFECFCV GVFLIKTMKR ILIGEVRTFE KHSTKRNYLL LLMALSQIPL LFWLGNVGVG AK
001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
Arabidopsis Description
Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.