Factsheet for TraesCS6B01G195300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	99.63	99.63
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	99.63	99.63
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	98.88	98.88
EES04687	Sorghum	cytosol, plasma membrane, plastid	89.89	89.89
EER93147	Sorghum	cytosol, plasma membrane, plastid	88.02	88.02
TraesCS7B01G300300.1	Wheat	plasma membrane	84.27	84.27
Zm00001d053686_P001	Maize	cytosol	87.64	71.12
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	68.54	68.03
Bra039874.1-P	Field mustard	plastid	67.42	67.92
PGSC0003DMT400051743	Potato	plastid	67.79	67.29
KRH18296	Soybean	endoplasmic reticulum	67.79	67.29
CDY52184	Canola	plastid	67.79	67.04
CDY00621	Canola	plastid	65.92	66.92
CDX67799	Canola	plasma membrane	67.42	66.91
CDX98378	Canola	plasma membrane	67.42	66.91
Bra003379.1-P	Field mustard	plastid	68.16	66.91
KRG93809	Soybean	plastid	67.04	66.54
CDY12450	Canola	plasma membrane	67.04	66.3
PGSC0003DMT400048758	Potato	plastid	66.29	66.29
AT3G59500.1	Thale cress	plasma membrane	66.67	66.17
CDX89024	Canola	plasma membrane	65.92	66.17
Bra014538.1-P	Field mustard	plastid	65.54	65.79
PGSC0003DMT400091443	Potato	cytosol	29.96	64.52
TraesCS2B01G022800.1	Wheat	plasma membrane	64.79	64.31
KRH45179	Soybean	plastid	65.17	63.74
Solyc06g083630.2.1	Tomato	plastid	68.16	62.12
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	40.82	58.6
CDY05995	Canola	plasma membrane	37.83	55.49
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	68.91	54.6
VIT_11s0037g00310.t01	Wine grape	cytosol	54.31	53.31
Solyc07g005670.1.1	Tomato	extracellular	53.56	52.57
CDX71903	Canola	plastid	32.96	51.76
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	66.67	51.74
KRH01468	Soybean	plasma membrane	65.54	44.76

Protein Annotations

EnsemblPlants:TraesCS6B01G195300.1	EnsemblPlantsGene:TraesCS6B01G195300	InterPro:Yif1_fam	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	PFAM:PF03878
TMHMM:TMhelix	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:230763371..230768203

Molecular Weight (calculated)

29783.6 Da

IEP (calculated)

9.752

GRAVY (calculated)

0.287

Length

267 amino acids

Sequence
(BLAST)

001: MAAMNSDLGG LGPRPANAPP NPFESAMYGA GPGLIRTGLG AYGEKFLGSS SEFMQSNITQ YLSDPQYYFQ VNSQYVRNKL KVVLFPFFHR GHWTRITQPV
101: GGRLSYKPPI QDINAPDLYI PLMAFGTYIV IAGYALGVLG RFTPEALTLQ FTRGLVGWFL QVVLIKGLLY SLGSGEAPLL DIVAYAGYGF AGTSLAMLAR
201: IFWSYLYYFI MPWFCLCTGV FLVKTMKRVL LGGPRSYERH PSRNHYFLLF LAVVQFPMLF WLGNISG

Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)

001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Arabidopsis Description

HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.