Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 76.29 | 94.01 |
| TraesCS6A01G167600.1 | Wheat | cytosol, plasma membrane, plastid | 71.43 | 88.02 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 71.43 | 88.02 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 71.12 | 87.64 |
| HORVU6Hr1G034030.2 | Barley | cytosol, plasma membrane, plastid | 71.12 | 87.64 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 69.0 | 85.02 |
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 66.57 | 82.02 |
| TraesCS7B01G300300.1 | Wheat | plasma membrane | 65.96 | 81.27 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 65.65 | 80.9 |
| HORVU1Hr1G028870.1 | Barley | plastid | 34.35 | 73.38 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 28.57 | 71.21 |
| AT1G30890.1 | Thale cress | cytosol, plasma membrane, plastid | 54.71 | 66.91 |
| Bra039874.1-P | Field mustard | plastid | 53.8 | 66.79 |
| CDY52184 | Canola | plastid | 54.1 | 65.93 |
| Bra003379.1-P | Field mustard | plastid | 54.1 | 65.44 |
| CDX98378 | Canola | plasma membrane | 53.5 | 65.43 |
| PGSC0003DMT400051743 | Potato | plastid | 53.5 | 65.43 |
| CDX67799 | Canola | plasma membrane | 53.5 | 65.43 |
| HORVU7Hr1G094010.8 | Barley | mitochondrion | 67.17 | 65.19 |
| CDY12450 | Canola | plasma membrane | 53.5 | 65.19 |
| PGSC0003DMT400048758 | Potato | plastid | 52.89 | 65.17 |
| KRH18296 | Soybean | endoplasmic reticulum | 53.19 | 65.06 |
| CDX89024 | Canola | plasma membrane | 52.58 | 65.04 |
| KRG93809 | Soybean | plastid | 52.89 | 64.68 |
| AT3G59500.1 | Thale cress | plasma membrane | 52.89 | 64.68 |
| Bra014538.1-P | Field mustard | plastid | 52.28 | 64.66 |
| CDY00621 | Canola | plastid | 51.67 | 64.64 |
| KRH45179 | Soybean | plastid | 51.67 | 62.27 |
| Zm00001d012393_P004 | Maize | extracellular | 50.76 | 61.85 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 49.85 | 61.42 |
| PGSC0003DMT400091443 | Potato | cytosol | 23.1 | 61.29 |
| Solyc06g083630.2.1 | Tomato | plastid | 54.1 | 60.75 |
| Bra007455.1-P | Field mustard | cytosol, golgi, mitochondrion, plasma membrane | 33.43 | 59.14 |
| CDY05995 | Canola | plasma membrane | 31.0 | 56.04 |
| VIT_11s0037g00310.t01 | Wine grape | cytosol | 44.98 | 54.41 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 54.71 | 53.41 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 53.5 | 51.16 |
| Solyc07g005670.1.1 | Tomato | extracellular | 41.95 | 50.74 |
| CDX71903 | Canola | plastid | 26.14 | 50.59 |
| KRH01468 | Soybean | plasma membrane | 52.58 | 44.25 |
Protein Annotations
| EnsemblPlants:Zm00001d053686_P001 | EnsemblPlants:Zm00001d053686_T001 | EnsemblPlantsGene:Zm00001d053686 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Yif1_fam | PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 | PFAM:PF03878 | ProteinID:AQK60128.1 | TMHMM:TMhelix |
| UniParc:UPI00084586B1 | UniProt:A0A1D6QRJ8 | MapMan:35.2 | : | : | : |
Description
Integral membrane HRF1 family protein
Coordinates
chr4:-:239029245..239032219
Molecular Weight (calculated)
36161.6 Da
IEP (calculated)
9.252
GRAVY (calculated)
0.333
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MTWFSVGLEG MPRIVTATNE PLNIAWHVLG CCGNAKEPGL HGVIGVKGPT SAIGKCCWGL VTMAAMNTGM GGLGGRPIHP QANPFGTALQ GAGPGLIRTG
101: LETYGGRILD SSSEFMQSNI TQYLSDPQYY FQVNSQYVRN KLKVILFPFL HRGHWTRITE PVGGRLSYKP PVQDINAPDL YIPLMAFGTY IVAAGYALGV
201: LGRFTPEALT LQFSKGILGW FLQVVLIKGL LYSLGSGEAP LLDIVAYAGY CFAGTSLAMV ARIFWSYLYY FIMPWFCLCT GVFLVKTMKR VLLGGPRSYE
301: RHPGRNHYFL IFLAVVQFPM LFWLGNICG
101: LETYGGRILD SSSEFMQSNI TQYLSDPQYY FQVNSQYVRN KLKVILFPFL HRGHWTRITE PVGGRLSYKP PVQDINAPDL YIPLMAFGTY IVAAGYALGV
201: LGRFTPEALT LQFSKGILGW FLQVVLIKGL LYSLGSGEAP LLDIVAYAGY CFAGTSLAMV ARIFWSYLYY FIMPWFCLCT GVFLVKTMKR VLLGGPRSYE
301: RHPGRNHYFL IFLAVVQFPM LFWLGNICG
001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
Arabidopsis Description
Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.