Factsheet for Bra003379.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67799	Canola	plasma membrane	98.9	100.0
CDX98378	Canola	plasma membrane	97.79	98.88
AT3G59500.1	Thale cress	plasma membrane	94.85	95.91
Bra014538.1-P	Field mustard	plastid	91.18	93.23
Bra039874.1-P	Field mustard	plastid	84.93	87.17
KRH18296	Soybean	endoplasmic reticulum	81.99	82.9
KRG93809	Soybean	plastid	81.25	82.16
PGSC0003DMT400048758	Potato	plastid	79.41	80.9
PGSC0003DMT400051743	Potato	plastid	79.78	80.67
KRH45179	Soybean	plastid	80.51	80.22
Solyc06g083630.2.1	Tomato	plastid	80.51	74.74
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	50.74	74.19
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	70.96	72.01
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	69.49	70.79
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	67.28	68.54
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	67.28	68.54
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	67.28	68.54
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	66.91	68.16
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	66.18	67.42
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	83.46	67.36
EES04687	Sorghum	cytosol, plasma membrane, plastid	65.44	66.67
TraesCS7D01G394000.1	Wheat	plasma membrane	64.71	65.92
TraesCS7B01G300300.1	Wheat	plasma membrane	64.71	65.92
KXG24074	Sorghum	plasma membrane	64.71	65.92
TraesCS7A01G400200.1	Wheat	plasma membrane	64.71	65.92
EER93147	Sorghum	cytosol, plasma membrane, plastid	64.34	65.54
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	62.87	64.04
Os04t0165400-01	Rice	cytosol	65.81	63.93
TraesCS2D01G001300.1	Wheat	plasma membrane	59.93	63.92
TraesCS2A01G001100.1	Wheat	plasma membrane	59.93	63.92
Zm00001d012393_P004	Maize	extracellular	62.87	63.33
TraesCS2B01G022800.1	Wheat	plasma membrane	62.5	63.2
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	79.41	62.79
HORVU1Hr1G028870.1	Barley	plastid	35.29	62.34
TraesCS2D01G595700.1	Wheat	plasma membrane	55.15	61.98
KRH01468	Soybean	plasma membrane	79.78	55.5
HORVU7Hr1G094050.2	Barley	cytosol	26.84	55.3
Zm00001d053686_P001	Maize	cytosol	65.44	54.1
HORVU7Hr1G094010.8	Barley	mitochondrion	65.07	52.21

Protein Annotations

EnsemblPlants:Bra003379.1	EnsemblPlants:Bra003379.1-P	EnsemblPlantsGene:Bra003379	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Yif1_fam	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	PFAM:PF03878	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002541711	UniProt:M4CGP6	MapMan:35.2	:	:	:

Description

AT3G59500 (E=1e-143) | integral membrane HRF1 family protein

Coordinates

chrA07:+:12917516..12918598

Molecular Weight (calculated)

30433.4 Da

IEP (calculated)

9.252

GRAVY (calculated)

0.316

Length

272 amino acids

Sequence
(BLAST)

001: MAEMYNNMGP QPGMPMPQAV PQPNPFGNAF SGPGSGLIRS GLGAYGEKIF GSSSEYVQSN ITRYFSDPQY YFQVNDQYVR NKLKIVLLPF LHRGHWTRIS
101: EPVGGRLSYK PPIYDINAPD LYIPLMAFGT YVVLAGLSLG LYGKFSPEAL NWLFVKGMVG WFLQVMLLKI TLLSLGSGEA PLLDIVAYAG YTFTGLCLAV
201: LGKIIWGYSY YALLPWTCLC SGVFLVKTMK RVLFAEARSY DSSRHHYLLI FVALAQFPLL IWLGNISVNW LF

Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)

001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Arabidopsis Description

HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.