Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG24074 | Sorghum | plasma membrane | 97.0 | 97.0 |
| Zm00001d012393_P004 | Maize | extracellular | 96.25 | 95.19 |
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 85.39 | 89.41 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 85.39 | 89.41 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 88.39 | 87.73 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 79.4 | 87.6 |
| Os04t0165400-01 | Rice | cytosol | 88.76 | 84.64 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 76.03 | 76.03 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 75.28 | 75.0 |
| AT1G30890.1 | Thale cress | cytosol, plasma membrane, plastid | 66.29 | 65.8 |
| Bra039874.1-P | Field mustard | plastid | 64.79 | 65.28 |
| CDY52184 | Canola | plastid | 65.92 | 65.19 |
| AT3G59500.1 | Thale cress | plasma membrane | 65.54 | 65.06 |
| CDY12450 | Canola | plasma membrane | 65.17 | 64.44 |
| PGSC0003DMT400051743 | Potato | plastid | 64.79 | 64.31 |
| CDX98378 | Canola | plasma membrane | 64.42 | 63.94 |
| CDY00621 | Canola | plastid | 62.92 | 63.88 |
| PGSC0003DMT400048758 | Potato | plastid | 63.67 | 63.67 |
| CDX67799 | Canola | plasma membrane | 64.04 | 63.57 |
| KRH18296 | Soybean | endoplasmic reticulum | 63.67 | 63.2 |
| CDX89024 | Canola | plasma membrane | 62.92 | 63.16 |
| PGSC0003DMT400091443 | Potato | cytosol | 29.21 | 62.9 |
| Bra003379.1-P | Field mustard | plastid | 64.04 | 62.87 |
| Bra014538.1-P | Field mustard | plastid | 62.55 | 62.78 |
| KRG93809 | Soybean | plastid | 62.55 | 62.08 |
| KRH45179 | Soybean | plastid | 63.3 | 61.9 |
| Solyc06g083630.2.1 | Tomato | plastid | 64.79 | 59.04 |
| Bra007455.1-P | Field mustard | cytosol, golgi, mitochondrion, plasma membrane | 40.07 | 57.53 |
| CDY05995 | Canola | plasma membrane | 37.08 | 54.4 |
| CDX71903 | Canola | plastid | 34.46 | 54.12 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 66.67 | 52.82 |
| VIT_11s0037g00310.t01 | Wine grape | cytosol | 52.43 | 51.47 |
| Solyc07g005670.1.1 | Tomato | extracellular | 50.94 | 50.0 |
| Zm00001d053686_P001 | Maize | cytosol | 61.42 | 49.85 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 62.92 | 48.84 |
| KRH01468 | Soybean | plasma membrane | 63.67 | 43.48 |
Protein Annotations
| EnsemblPlants:Zm00001d041267_P001 | EnsemblPlants:Zm00001d041267_T001 | EnsemblPlantsGene:Zm00001d041267 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Yif1_fam | PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 | PFAM:PF03878 | ProteinID:ONM32747.1 | ProteinID:ONM32748.1 |
| ProteinID:ONM32750.1 | TMHMM:TMhelix | UniParc:UPI0001CA97B0 | UniProt:A0A096S8W7 | MapMan:35.2 | : |
Description
Protein YIF1A
Coordinates
chr3:-:109160420..109163524
Molecular Weight (calculated)
30357.2 Da
IEP (calculated)
9.840
GRAVY (calculated)
0.220
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSNYGNPSG MQMPPQNSQP VQFDNPLYGA SSGLIRSGIG VYGEKFLGSS SEFMQSNINR YFSNPQYYFH VNDQYVRNKL KVILFPFFHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGSFII LSGFTLGFMG KFTPAAINLQ FTRALIGWGF QLMVLKGLLY SMGGGEVPLL DLVAYGGYLF AGLSLAVVAR
201: LVWAYSYYVM MPWMSLCMGV FLVRTMKRVL FTEMRSSERH SSRQHYFLLF MAIAQFPLFF WLGSIGA
101: GGRLSYKPPI YDINAPDLYI PFMAFGSFII LSGFTLGFMG KFTPAAINLQ FTRALIGWGF QLMVLKGLLY SMGGGEVPLL DLVAYGGYLF AGLSLAVVAR
201: LVWAYSYYVM MPWMSLCMGV FLVRTMKRVL FTEMRSSERH SSRQHYFLLF MAIAQFPLFF WLGSIGA
001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
Arabidopsis Description
Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.