Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 90.87 | 87.74 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 73.02 | 73.9 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 72.62 | 73.79 |
| Zm00001d020729_P001 | Maize | plasma membrane | 24.21 | 64.21 |
| Os05t0526400-01 | Rice | plasma membrane | 63.89 | 64.14 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 64.68 | 63.92 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 63.49 | 62.99 |
| TraesCS3A01G278800.1 | Wheat | golgi | 58.33 | 59.27 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 20.24 | 58.62 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 13.89 | 58.33 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 54.37 | 53.73 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 53.57 | 53.57 |
| Zm00001d020229_P001 | Maize | plasma membrane | 32.14 | 53.29 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 52.78 | 52.99 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 51.98 | 52.4 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 52.78 | 52.36 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 51.98 | 52.19 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 51.98 | 52.19 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 51.59 | 52.0 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 51.59 | 51.79 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 51.59 | 51.79 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 51.19 | 51.6 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 51.19 | 51.39 |
| Solyc03g007740.2.1 | Tomato | nucleus | 51.98 | 51.37 |
| KRH40357 | Soybean | endoplasmic reticulum | 51.98 | 50.97 |
| KRH59988 | Soybean | mitochondrion | 51.19 | 50.79 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 51.19 | 50.59 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 53.17 | 50.57 |
| KRH06560 | Soybean | endoplasmic reticulum | 51.19 | 50.39 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 50.79 | 50.2 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 50.79 | 50.2 |
| KRH00872 | Soybean | endoplasmic reticulum | 51.59 | 50.19 |
| Solyc01g095200.2.1 | Tomato | plastid | 52.38 | 50.19 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 50.79 | 49.81 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 51.59 | 49.43 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 49.6 | 49.41 |
| AT4G23630.2 | Thale cress | nucleus | 53.57 | 49.09 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 49.21 | 49.01 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 49.21 | 48.82 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 49.21 | 48.82 |
| CDY62522 | Canola | cytosol | 15.48 | 48.75 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 51.59 | 48.69 |
| Bra000739.1-P | Field mustard | cytosol | 51.19 | 48.31 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 48.41 | 48.03 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 48.41 | 48.03 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 48.02 | 47.83 |
| CDY10954 | Canola | cytosol | 51.19 | 47.78 |
| Bra019285.1-P | Field mustard | cytosol | 50.79 | 47.76 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 50.79 | 47.41 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 50.79 | 47.41 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 50.79 | 47.23 |
| CDY24806 | Canola | cytosol | 51.19 | 47.08 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 51.19 | 46.91 |
| Bra010539.1-P | Field mustard | cytosol | 50.0 | 46.84 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 51.19 | 46.74 |
| CDY41666 | Canola | cytosol | 50.79 | 46.38 |
| Bra013717.1-P | Field mustard | nucleus | 50.79 | 46.38 |
| AT4G11220.1 | Thale cress | nucleus | 49.21 | 45.76 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 42.46 | 42.8 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.97 | 42.24 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 52.38 | 42.04 |
| CDY05135 | Canola | mitochondrion | 51.59 | 41.53 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 41.67 | 40.38 |
| TraesCS1A01G081500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 39.68 | 39.84 |
| AT4G01230.2 | Thale cress | cytosol | 38.1 | 39.34 |
| Bra037369.1-P | Field mustard | cytosol | 37.7 | 39.09 |
| CDY48510 | Canola | cytosol | 37.7 | 39.09 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 37.3 | 38.68 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 23.41 | 36.65 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 33.33 | 34.01 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 31.35 | 33.76 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 34.52 | 33.33 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 23.02 | 32.22 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 27.78 | 31.96 |
| KRG91601 | Soybean | mitochondrion | 41.67 | 30.88 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 22.62 | 28.64 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 24.21 | 26.87 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 25.79 | 26.53 |
| Bra035242.1-P | Field mustard | cytosol | 20.24 | 25.5 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 30.16 | 23.03 |
| CDX89122 | Canola | extracellular, mitochondrion | 9.13 | 15.03 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G346800.3 | EnsemblPlantsGene:TraesCS1A01G346800 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF99 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr1A:-:533148045..533149676
Molecular Weight (calculated)
27990.5 Da
IEP (calculated)
9.198
GRAVY (calculated)
0.326
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERKEESVM DKITEKFHGG SSSSSSSDDE GRSGSSSSVK AKIYRLFGRE KPVHSVLGGG KPADLFLWRN KKISGGVLAG ATAIWLLFEV LEYHLLTLLC
101: HGFILTLGIL FLWSNASAFV NKCPPNIPEV KIPEDLAVNV ARSLRYEINR GFASLRAIGQ GRDLKKFLIV VAGLWILSFL GSCCNFLTLF YIGICGFLLQ
201: FVTYICAISL PSIVSLIMPS CLQSSWCFTP CLFCTRSMRT RSMLLERRPW LS
101: HGFILTLGIL FLWSNASAFV NKCPPNIPEV KIPEDLAVNV ARSLRYEINR GFASLRAIGQ GRDLKKFLIV VAGLWILSFL GSCCNFLTLF YIGICGFLLQ
201: FVTYICAISL PSIVSLIMPS CLQSSWCFTP CLFCTRSMRT RSMLLERRPW LS
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.