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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52012 Canola cytosol, peroxisome, plasma membrane 92.09 91.73
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 92.09 91.73
CDY53913 Canola cytosol, peroxisome, plasma membrane 92.09 91.73
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 82.61 81.96
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 64.82 64.31
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 66.01 63.5
KRH40357 Soybean endoplasmic reticulum 63.24 62.26
Solyc01g095200.2.1 Tomato plastid 64.43 61.98
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 64.82 61.89
KRH00872 Soybean endoplasmic reticulum 63.24 61.78
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 62.85 61.63
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 60.47 60.96
KRH06560 Soybean endoplasmic reticulum 61.66 60.94
KRG99174 Soybean endoplasmic reticulum, plasma membrane 20.95 60.92
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 58.89 59.36
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 58.1 59.27
Os01t0226300-01 Rice plasma membrane 41.5 58.99
GSMUA_Achr3P31920_001 Banana cytosol 50.99 58.9
TraesCS3A01G278800.1 Wheat golgi 57.71 58.87
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 58.5 58.5
Os05t0526400-01 Rice plasma membrane 57.71 58.17
EES19841 Sorghum cytosol, nucleus, plasma membrane 58.5 58.04
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 57.71 57.94
Os01t0736900-01 Rice plasma membrane 57.71 57.71
Zm00001d012776_P001 Maize extracellular 57.71 57.71
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 56.52 57.66
Zm00001d043551_P003 Maize plasma membrane 58.5 57.59
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 57.31 57.54
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 56.52 57.43
AT4G23630.2 Thale cress nucleus 62.06 57.09
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 57.31 56.86
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 57.71 56.81
GSMUA_Achr4P08400_001 Banana cytosol 56.52 56.52
Zm00001d038768_P001 Maize extracellular, mitochondrion 56.52 56.3
KXG33320 Sorghum cytosol, nucleus, plasma membrane 57.31 56.2
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 54.15 54.8
AT4G11220.1 Thale cress nucleus 58.5 54.61
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 59.68 54.12
AT4G01230.2 Thale cress cytosol 51.38 53.28
KXG31516 Sorghum cytosol, nucleus, plasma membrane 59.68 53.17
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 56.13 52.4
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 58.5 51.75
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 58.1 51.4
Zm00001d020229_P001 Maize plasma membrane 30.83 51.32
KRH48008 Soybean cytosol, peroxisome, plasma membrane 63.64 51.27
Zm00001d016041_P001 Maize extracellular 45.85 50.43
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 45.45 50.0
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 60.47 50.0
VIT_02s0025g00590.t01 Wine grape mitochondrion 11.86 50.0
Zm00001d020729_P001 Maize plasma membrane 18.58 49.47
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 44.66 48.71
TraesCS1A01G346800.3 Wheat plasma membrane 47.83 48.02
HORVU3Hr1G030760.2 Barley mitochondrion 57.71 46.5
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 58.1 45.65
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 46.64 45.21
EER89811 Sorghum peroxisome 44.66 44.14
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 45.45 44.06
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 44.66 43.46
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 44.66 43.46
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 44.66 43.46
Os06t0503400-01 Rice plasma membrane 45.06 43.02
CDX89122 Canola extracellular, mitochondrion 24.51 40.52
GSMUA_Achr3P15760_001 Banana cytosol 23.32 39.33
HORVU7Hr1G081290.4 Barley plastid 35.18 38.53
HORVU7Hr1G075700.2 Barley mitochondrion 44.66 37.67
AT3G18260.1 Thale cress plasma membrane 32.81 36.89
AT1G68230.2 Thale cress plasma membrane 30.83 36.28
AT3G10260.3 Thale cress plasma membrane 37.94 35.96
AT2G15280.1 Thale cress plasma membrane 24.9 31.34
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 24.51 30.54
AT3G19460.3 Thale cress plasma membrane 26.09 28.21
AT3G10915.7 Thale cress plasma membrane 27.27 27.49
AT2G23640.1 Thale cress cytosol, peroxisome, plasma membrane 20.55 25.24
Protein Annotations
MapMan:13.7.2.1EntrezGene:825329ProteinID:AEE80222.1ProteinID:AEE80223.2ArrayExpress:AT3G61560EnsemblPlantsGene:AT3G61560
RefSeq:AT3G61560TAIR:AT3G61560RefSeq:AT3G61560-TAIR-GEnsemblPlants:AT3G61560.1TAIR:AT3G61560.1Unigene:At.34268
EMBL:BT014988EMBL:BT020345ProteinID:CAB71086.1ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0005886GO:GO:0009506GO:GO:0016020GO:GO:0016021InterPro:IPR003388
RefSeq:NP_001319815.1RefSeq:NP_191715.2PFAM:PF02453PO:PO:0000293PFscan:PS50845PANTHER:PTHR10994
PANTHER:PTHR10994:SF95UniProt:Q6DBN4InterPro:ReticulonTMHMM:TMhelixUniParc:UPI000034F046SEG:seg
Description
RTNLB6Reticulon-like protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN4]
Coordinates
chr3:+:22777741..22780191
Molecular Weight (calculated)
28817.7 Da
IEP (calculated)
8.274
GRAVY (calculated)
0.181
Length
253 amino acids
Sequence
(BLAST)
001: MAEELEKSMH KEESLMEKIA DKIHDHDSSS SSDSEHEKPE SPSALKAKIY RLFGREKPVH KVLGGGLPAD VFLWRDKKLS ASVLGVATAI WVLFELVEYH
101: FLSLVCHILI FALAALFLLS NAHAFMNKTP PKIPEIHIKE EHFLMIVSAL RNELNQAFVI LRSIALGRDL KKFLMVVFGL WIISVVGNWF NFLTLVYICF
201: VVLHTVPMLY EKHEDKVDPV AEKTLKELKK HYMVFDEKVL SKLPVASLKA KLG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.