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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00860_001
GSMUA_Achr1P04070_001
GSMUA_Achr1P24970_001
GSMUA_Achr1P25230_001
GSMUA_Achr2P07050_001
GSMUA_Achr3P15760_001
GSMUA_Achr3P31920_001
GSMUA_Achr4P08400_001
GSMUA_Achr4P16430_001
GSMUA_Achr4P20820_001
GSMUA_Achr4P22340_001
GSMUA_Achr4P27140_001
GSMUA_Achr4P30410_001
GSMUA_Achr5P06850_001
GSMUA_Achr5P15070_001
GSMUA_Achr5P23170_001
GSMUA_Achr6P31860_001
GSMUA_Achr6P34270_001
GSMUA_Achr7P01900_001
GSMUA_Achr7P09070_001
GSMUA_Achr7P17170_001
GSMUA_Achr7P17180_001
GSMUA_Achr7P18540_001
GSMUA_Achr8P00730_001
GSMUA_Achr8P02620_001
GSMUA_Achr8P27830_001
GSMUA_Achr8P29730_001
GSMUA_Achr8P29900_001
GSMUA_Achr9P03220_001
GSMUA_Achr9P05440_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 GSMUA_Achr1P24970_001 AT1G09330.1 21798944
AT4G11220.1 GSMUA_Achr2P07050_001 AT1G09330.1 21798944
AT4G11220.1 GSMUA_Achr8P29900_001 AT1G09330.1 21798944
AT4G11220.1 GSMUA_Achr4P22340_001 AT3G59500.1 21798944
AT4G11220.1 GSMUA_Achr5P15070_001 AT3G59500.1 21798944
AT5G41600.1 GSMUA_Achr7P09070_001 AT1G55190.1 21798944
AT5G41600.1 GSMUA_Achr10P... AT1G77350.1 21798944
AT5G41600.1 GSMUA_Achr4P16430_001 AT2G03120.1 21798944
AT5G41600.1 GSMUA_Achr5P23170_001 AT2G39960.1 21798944
AT5G41600.1 GSMUA_Achr7P18540_001 AT2G39960.1 21798944
AT5G41600.1 GSMUA_Achr1P00860_001 AT2G46890.1 21798944
AT5G41600.1 GSMUA_Achr1P25230_001 AT3G02420.1 21798944
AT5G41600.1 GSMUA_Achr7P17170_001 AT3G02420.1 21798944
AT5G41600.1 GSMUA_Achr7P17180_001 AT3G02420.1 21798944
AT5G41600.1 GSMUA_Achr8P29730_001 AT3G02420.1 21798944
AT5G41600.1 GSMUA_Achr4P20820_001 AT3G07950.1 21798944
AT5G41600.1 GSMUA_Achr7P01900_001 AT3G07950.1 21798944
AT5G41600.1 GSMUA_Achr8P00730_001 AT3G27080.1 21798944
AT5G41600.1 GSMUA_Achr10P... AT3G46060.1 21798944
AT5G41600.1 GSMUA_Achr10P... AT3G46060.1 21798944
AT5G41600.1 GSMUA_Achr11P... AT3G46060.1 21798944
AT5G41600.1 GSMUA_Achr6P34270_001 AT3G46060.1 21798944
AT5G41600.1 GSMUA_Achr8P02620_001 AT3G46060.1 21798944
AT5G41600.1 GSMUA_Achr9P03220_001 AT3G46060.1 21798944
AT5G41600.1 GSMUA_AchrUn_... AT3G46060.1 21798944
AT5G41600.1 GSMUA_Achr4P22340_001 AT3G59500.1 21798944
AT5G41600.1 GSMUA_Achr5P15070_001 AT3G59500.1 21798944
AT5G41600.1 GSMUA_Achr10P... AT5G41600.1 21798944
AT5G41600.1 GSMUA_Achr3P15760_001 AT5G41600.1 21798944
AT5G41600.1 GSMUA_Achr3P31920_001 AT5G41600.1 21798944
AT5G41600.1 GSMUA_Achr4P08400_001 AT5G41600.1 21798944
AT5G41600.1 GSMUA_Achr5P06850_001 AT5G41600.1 21798944
AT5G41600.1 GSMUA_Achr6P31860_001 AT5G41600.1 21798944
AT5G41600.1 GSMUA_Achr8P27830_001 AT5G41600.1 21798944
AT5G41600.1 GSMUA_Achr9P05440_001 AT5G41600.1 21798944
AT5G41600.1 GSMUA_AchrUn_... AT5G41600.1 21798944
AT5G41600.1 GSMUA_Achr11P... AT5G53560.1 21798944
AT5G41600.1 GSMUA_Achr1P04070_001 AT5G53560.1 21798944
AT5G41600.1 GSMUA_Achr4P27140_001 AT5G53560.1 21798944
AT5G41600.1 GSMUA_Achr4P30410_001 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 85.32 85.66
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 82.94 83.27
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 75.4 73.64
GSMUA_Achr3P31920_001 Banana cytosol 61.51 70.78
GSMUA_Achr4P08400_001 Banana cytosol 69.05 68.77
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 67.86 67.86
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 67.86 67.06
KRH41254 Soybean cytosol, nucleus, plasma membrane 67.06 66.54
KRH59988 Soybean mitochondrion 67.06 66.54
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 64.29 64.29
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 64.29 63.53
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 66.27 63.02
Solyc03g007740.2.1 Tomato nucleus 63.49 62.75
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 62.3 62.55
CDY38194 Canola cytosol, nucleus, plasma membrane 61.9 62.4
Solyc01g095200.2.1 Tomato plastid 65.08 62.36
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 61.9 62.15
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 64.68 61.98
KRH06560 Soybean endoplasmic reticulum 62.7 61.72
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 61.11 61.6
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 61.11 61.6
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 61.11 61.35
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 61.51 61.26
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 61.9 61.18
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 65.48 61.11
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 61.11 60.87
KRH40357 Soybean endoplasmic reticulum 61.9 60.7
CDY52012 Canola cytosol, peroxisome, plasma membrane 61.11 60.63
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 60.32 60.56
CDX79993 Canola cytosol, peroxisome, plasma membrane 60.32 60.56
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 64.68 60.37
KRH00872 Soybean endoplasmic reticulum 61.9 60.23
CDY53913 Canola cytosol, peroxisome, plasma membrane 60.32 59.84
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 60.32 59.84
CDY42012 Canola cytosol, peroxisome, plasma membrane 59.52 59.76
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 59.13 59.6
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 60.32 59.14
AT4G23630.2 Thale cress nucleus 64.29 58.91
KRG99174 Soybean endoplasmic reticulum, plasma membrane 20.24 58.62
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 59.13 58.43
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 57.94 57.71
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 57.94 57.48
Bra000739.1-P Field mustard cytosol 60.71 57.3
CDY24806 Canola cytosol 61.9 56.93
CDX90792 Canola cytosol, peroxisome, plasma membrane 60.32 56.93
CDY41666 Canola cytosol 62.3 56.88
CDY44123 Canola cytosol, nucleus, plasma membrane 62.3 56.88
Bra010539.1-P Field mustard cytosol 60.71 56.88
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 61.11 56.83
AT4G11220.1 Thale cress nucleus 61.11 56.83
CDY10954 Canola cytosol 60.71 56.67
Bra013717.1-P Field mustard nucleus 61.9 56.52
CDY57657 Canola cytosol, nucleus, plasma membrane 61.51 56.36
Bra019285.1-P Field mustard cytosol 59.92 56.34
CDY13240 Canola cytosol, peroxisome, plasma membrane 35.32 55.28
KRH35223 Soybean cytosol, nucleus, plasma membrane 54.76 55.2
CDY62522 Canola cytosol 16.67 52.5
GSMUA_Achr10P... Banana golgi, peroxisome, plasma membrane 51.59 52.42
KRH48008 Soybean cytosol, peroxisome, plasma membrane 65.08 52.23
GSMUA_Achr5P07570_001 Banana golgi, peroxisome, plasma membrane 50.79 51.61
GSMUA_Achr6P15870_001 Banana golgi, peroxisome, plasma membrane 50.0 50.81
VIT_02s0025g00590.t01 Wine grape mitochondrion 11.9 50.0
GSMUA_Achr3P15760_001 Banana cytosol 29.76 50.0
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, peroxisome 38.89 49.49
CDY05135 Canola mitochondrion 58.73 47.28
AT4G01230.2 Thale cress cytosol 44.84 46.31
CDY48510 Canola cytosol 42.46 44.03
CDY07184 Canola cytosol, peroxisome, plasma membrane 42.46 44.03
Bra037369.1-P Field mustard cytosol 42.46 44.03
GSMUA_Achr6P04560_001 Banana cytosol, peroxisome, plasma membrane 40.87 41.53
GSMUA_Achr8P31770_001 Banana peroxisome 35.71 40.36
KRG91601 Soybean mitochondrion 53.57 39.71
Bra035242.1-P Field mustard cytosol 31.35 39.5
GSMUA_Achr9P10200_001 Banana cytosol, peroxisome, plasma membrane 37.3 38.84
GSMUA_Achr2P07230_001 Banana golgi, plasma membrane, vacuole 32.14 38.57
CDX86802 Canola cytosol, nucleus, peroxisome 37.3 38.37
GSMUA_Achr7P05440_001 Banana peroxisome, plasma membrane, vacuole 32.14 36.32
GSMUA_Achr3P09820_001 Banana cytosol, peroxisome, plasma membrane 32.54 35.65
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 24.6 34.44
CDX89122 Canola extracellular, mitochondrion 19.44 32.03
GSMUA_Achr10P... Banana plasma membrane 28.97 31.74
GSMUA_Achr8P02250_001 Banana cytosol, mitochondrion, peroxisome, plasma membrane 28.57 29.15
GSMUA_Achr6P33560_001 Banana plasma membrane 29.37 28.03
GSMUA_Achr4P20190_001 Banana cytosol, plastid 31.35 28.01
GSMUA_AchrUn_... Banana golgi 34.92 25.0
Protein Annotations
EnsemblPlants:GSMUA_Achr6P31860_001EnsemblPlants:GSMUA_Achr6T31860_001EnsemblPlantsGene:GSMUA_Achr6G31860_001GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF70PFAM:PF02453PFscan:PS50845SEG:seg
TMHMM:TMhelixUniParc:UPI0002960655UniProt:M0TBY1MapMan:13.7.2.1::
Description
Reticulon-like protein B1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G31860_001]
Coordinates
chr6:+:31503261..31506439
Molecular Weight (calculated)
28384.7 Da
IEP (calculated)
8.849
GRAVY (calculated)
0.188
Length
252 amino acids
Sequence
(BLAST)
001: MAEHAEETLI EQVTEKIRDG VDSSSSSDSD DEKSKASVVT EAVKSKINRL FGREKPVHQI LGGGKPADVF LWKNKKASAA VLGGATAIWI FFELMEYHLL
101: TLFCHCLILS LAIIFLWSNA TFLINKSPPH IPVVSIPENL VVDIALSLRY EINRGFAVLR EIATGRDLKK FLIVIAGLWV LSTVGRCCNF LTLFYIVFVT
201: LHTLPFLYDK YEDKVDAFAE KASVEFKKHY AVFQAKYLSK IPRGPLKDKK FL
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.