Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 3
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 94.68 | 97.65 |
| Solyc01g095200.2.1 | Tomato | plastid | 75.67 | 75.67 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 66.16 | 69.32 |
| KRH40357 | Soybean | endoplasmic reticulum | 67.68 | 69.26 |
| KRH00872 | Soybean | endoplasmic reticulum | 67.68 | 68.73 |
| KRH06560 | Soybean | endoplasmic reticulum | 66.16 | 67.97 |
| Solyc03g007740.2.1 | Tomato | nucleus | 65.4 | 67.45 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 64.26 | 67.33 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 64.26 | 66.54 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 63.88 | 66.4 |
| Os01t0226300-01 | Rice | plasma membrane | 44.87 | 66.29 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 63.5 | 66.01 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 63.5 | 65.75 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 63.5 | 65.75 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 62.74 | 65.74 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 62.74 | 65.74 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 67.3 | 65.56 |
| Os05t0526400-01 | Rice | plasma membrane | 62.36 | 65.34 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 63.12 | 65.1 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 61.98 | 64.94 |
| Os01t0736900-01 | Rice | plasma membrane | 62.36 | 64.82 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 63.5 | 64.73 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 62.74 | 64.71 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 61.98 | 64.68 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 61.22 | 64.66 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 60.84 | 64.52 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.84 | 64.52 |
| Zm00001d043551_P003 | Maize | plasma membrane | 62.74 | 64.2 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 61.6 | 64.03 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 61.98 | 63.92 |
| TraesCS3A01G278800.1 | Wheat | golgi | 60.08 | 63.71 |
| Zm00001d012776_P001 | Maize | extracellular | 61.22 | 63.64 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 61.98 | 63.18 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 60.46 | 63.1 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 60.84 | 62.99 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 59.32 | 61.66 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 51.33 | 61.64 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 57.03 | 60.0 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 19.77 | 59.77 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 61.6 | 58.06 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 63.12 | 58.04 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 62.36 | 57.75 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 62.74 | 57.69 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 12.93 | 56.67 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 67.3 | 56.37 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 63.12 | 54.25 |
| Zm00001d020229_P001 | Maize | plasma membrane | 31.18 | 53.95 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 47.15 | 53.91 |
| Zm00001d016041_P001 | Maize | extracellular | 46.39 | 53.04 |
| Zm00001d020729_P001 | Maize | plasma membrane | 19.01 | 52.63 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 62.36 | 52.23 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 49.43 | 51.59 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 45.25 | 51.29 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 62.74 | 51.24 |
| EER89811 | Sorghum | peroxisome | 49.43 | 50.78 |
| AT4G01230.2 | Thale cress | cytosol | 46.01 | 49.59 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 49.05 | 49.43 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 48.29 | 48.66 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 44.87 | 48.56 |
| CDY48510 | Canola | cytosol | 44.87 | 48.56 |
| Bra037369.1-P | Field mustard | cytosol | 44.87 | 48.56 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.91 | 48.46 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.91 | 48.46 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.53 | 48.08 |
| Solyc06g082740.2.1 | Tomato | nucleus | 41.83 | 48.03 |
| Os06t0503400-01 | Rice | plasma membrane | 48.29 | 47.92 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 43.73 | 47.13 |
| Solyc12g006290.1.1 | Tomato | nucleus | 39.16 | 44.21 |
| HORVU7Hr1G081290.4 | Barley | plastid | 38.02 | 43.29 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 24.33 | 42.67 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 47.91 | 42.0 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 33.46 | 39.82 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 30.8 | 38.76 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 31.94 | 38.36 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 20.53 | 38.03 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 27.38 | 37.89 |
| CDX89122 | Canola | extracellular, mitochondrion | 20.15 | 34.64 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 26.24 | 31.51 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 17.11 | 24.06 |
Protein Annotations
| MapMan:13.7.2.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | UniProt:K4CYG5 | PFAM:PF02453 |
| PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | EnsemblPlantsGene:Solyc10g011870.2 | EnsemblPlants:Solyc10g011870.2.1 |
| TMHMM:TMhelix | UniParc:UPI00001AB8A4 | SEG:seg | : | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4CYG5]
Coordinates
chr10:-:4141737..4146468
Molecular Weight (calculated)
29445.9 Da
IEP (calculated)
8.102
GRAVY (calculated)
0.085
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQVEQHSE HKEESFMEKI ADKIHFDRSS SSSSSDSDSE VKPAAAPEAS PSSVKAKIWR LFGREKPVHH VFGGGKPADV FLWRNKKISA SVLGGATAIW
101: VLFELLEYFL VGLVCHLLIF TLAVLFLWSN ATTFINKKRP HIPEVQLPEE PILEIASALS IEINRALSML REIATGKDPK KFLAVVTGLW ILSVVGNCCN
201: FLTLFYILFV LLHTVPVLYE KYEDKVDPLA EKAVQEIKKQ YAIFDAKVLS KIPIGPLKDK KNA
101: VLFELLEYFL VGLVCHLLIF TLAVLFLWSN ATTFINKKRP HIPEVQLPEE PILEIASALS IEINRALSML REIATGKDPK KFLAVVTGLW ILSVVGNCCN
201: FLTLFYILFV LLHTVPVLYE KYEDKVDPLA EKAVQEIKKQ YAIFDAKVLS KIPIGPLKDK KNA
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.