Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 3
- plasma membrane 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
plastid: 26371478 |
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 96.58 | 95.85 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 75.67 | 75.67 |
| KRH40357 | Soybean | endoplasmic reticulum | 69.58 | 71.21 |
| KRH06560 | Soybean | endoplasmic reticulum | 69.2 | 71.09 |
| KRH00872 | Soybean | endoplasmic reticulum | 69.58 | 70.66 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 23.19 | 70.11 |
| Solyc03g007740.2.1 | Tomato | nucleus | 66.92 | 69.02 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 66.16 | 68.77 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 65.4 | 68.53 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 70.34 | 68.52 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 65.02 | 68.13 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 66.16 | 67.44 |
| Os01t0226300-01 | Rice | plasma membrane | 45.63 | 67.42 |
| Zm00001d043551_P003 | Maize | plasma membrane | 64.64 | 66.15 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 63.88 | 65.88 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 64.26 | 65.5 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 62.74 | 65.48 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 63.12 | 65.35 |
| Os05t0526400-01 | Rice | plasma membrane | 62.36 | 65.34 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 61.6 | 65.32 |
| Zm00001d012776_P001 | Maize | extracellular | 62.74 | 65.22 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 63.12 | 65.1 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 62.36 | 65.08 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 61.6 | 65.06 |
| Os01t0736900-01 | Rice | plasma membrane | 62.36 | 64.82 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 61.98 | 64.43 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 61.98 | 64.17 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 61.98 | 64.17 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 61.98 | 64.17 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 61.22 | 64.14 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 61.22 | 64.14 |
| TraesCS3A01G278800.1 | Wheat | golgi | 60.46 | 64.11 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 61.6 | 64.03 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 61.98 | 63.92 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.08 | 63.71 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 60.46 | 63.35 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 60.84 | 63.24 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 59.32 | 62.4 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 51.71 | 62.1 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 64.26 | 60.57 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 65.4 | 60.14 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 64.64 | 59.86 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 65.02 | 59.79 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 69.96 | 58.6 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 50.95 | 58.26 |
| Zm00001d020229_P001 | Maize | plasma membrane | 33.08 | 57.24 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 63.88 | 54.9 |
| Zm00001d016041_P001 | Maize | extracellular | 47.91 | 54.78 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 64.64 | 54.14 |
| Zm00001d020729_P001 | Maize | plasma membrane | 19.39 | 53.68 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 65.4 | 53.42 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 12.17 | 53.33 |
| EER89811 | Sorghum | peroxisome | 51.71 | 53.12 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 46.77 | 53.02 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 52.09 | 52.49 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 50.19 | 52.38 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 51.33 | 51.92 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 51.33 | 51.92 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 47.91 | 51.64 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.95 | 51.54 |
| Os06t0503400-01 | Rice | plasma membrane | 50.95 | 50.57 |
| Solyc06g082740.2.1 | Tomato | nucleus | 43.35 | 49.78 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 48.67 | 49.04 |
| Bra037369.1-P | Field mustard | cytosol | 43.73 | 47.33 |
| CDY48510 | Canola | cytosol | 43.73 | 47.33 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 43.73 | 47.33 |
| HORVU7Hr1G081290.4 | Barley | plastid | 40.68 | 46.32 |
| AT4G01230.2 | Thale cress | cytosol | 42.97 | 46.31 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 50.57 | 44.33 |
| Solyc12g006290.1.1 | Tomato | nucleus | 37.64 | 42.49 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 23.57 | 41.33 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 21.29 | 39.44 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 31.94 | 38.01 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 31.18 | 37.44 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 27.0 | 37.37 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 28.52 | 35.89 |
| CDX89122 | Canola | extracellular, mitochondrion | 19.77 | 33.99 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 26.62 | 31.96 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 17.49 | 24.6 |
Protein Annotations
| EnsemblPlants:Solyc01g095200.2.1 | EnsemblPlantsGene:Solyc01g095200.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | InterPro:Reticulon |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI00001AB8A5 | UniProt:K4AZQ9 | MapMan:13.7.2.1 | : | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4AZQ9]
Coordinates
chr1:+:86545598..86548675
Molecular Weight (calculated)
29720.3 Da
IEP (calculated)
8.242
GRAVY (calculated)
-0.056
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHVENSDP KGESLLEKIA DKFHGDDSSS SSESDTETKK PAVKSEVEPE TETLKNKVWR LFGREKPVHK VFGGGKPADV FLWRNKKISA TVIGGATAIW
101: VLFELLEYHL LTLICHILII TLAVLFLWSN ATTFINKKPP HIPEVHLPEG PILQVASALR IEINRALDLL REIASGRELK KFLAVIAGLW ILSIVGSWCN
201: FLTLFYISFV LLHTVPVIYE KYEDKVDPLA EKAMHEIKKQ YAVFDEKVLS KIPRGPLKDK KKD
101: VLFELLEYHL LTLICHILII TLAVLFLWSN ATTFINKKPP HIPEVHLPEG PILQVASALR IEINRALDLL REIASGRELK KFLAVIAGLW ILSIVGSWCN
201: FLTLFYISFV LLHTVPVIYE KYEDKVDPLA EKAMHEIKKQ YAVFDEKVLS KIPRGPLKDK KKD
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.