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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plasma membrane, plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48510 Canola cytosol 100.0 100.0
AT4G01230.2 Thale cress cytosol 84.77 84.43
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 51.03 49.4
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 52.26 49.22
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 51.44 49.21
Os01t0226300-01 Rice plasma membrane 34.98 47.75
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 48.97 47.22
KRH00872 Soybean endoplasmic reticulum 49.79 46.72
KRH40357 Soybean endoplasmic reticulum 49.38 46.69
GSMUA_Achr3P31920_001 Banana cytosol 41.56 46.12
KRH06560 Soybean endoplasmic reticulum 48.15 45.7
Os05t0526400-01 Rice plasma membrane 46.5 45.02
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 46.5 45.02
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 46.5 45.02
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 48.56 44.87
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 45.68 44.76
Zm00001d043551_P003 Maize plasma membrane 47.33 44.75
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 46.91 44.71
TraesCS3A01G278800.1 Wheat golgi 45.27 44.35
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 45.27 44.35
Zm00001d012776_P001 Maize extracellular 46.09 44.27
Os01t0736900-01 Rice plasma membrane 46.09 44.27
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 45.27 44.18
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 48.15 44.15
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 45.27 44.0
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 45.27 43.82
KXG33320 Sorghum cytosol, nucleus, plasma membrane 46.5 43.8
Solyc01g095200.2.1 Tomato plastid 47.33 43.73
GSMUA_Achr4P08400_001 Banana cytosol 45.27 43.48
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 45.27 43.14
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 44.86 43.08
Bra010539.1-P Field mustard cytosol 47.33 42.75
Bra019285.1-P Field mustard cytosol 46.91 42.54
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 44.03 42.46
Bra013717.1-P Field mustard nucleus 48.15 42.39
Bra000739.1-P Field mustard cytosol 46.5 42.32
Zm00001d020729_P001 Maize plasma membrane 16.46 42.11
EES19841 Sorghum cytosol, nucleus, plasma membrane 43.62 41.57
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 42.39 41.2
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 46.91 40.86
Zm00001d038768_P001 Maize extracellular, mitochondrion 42.39 40.55
KRG99174 Soybean endoplasmic reticulum, plasma membrane 14.4 40.23
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 47.33 40.21
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 47.33 40.21
KXG31516 Sorghum cytosol, nucleus, plasma membrane 46.91 40.14
Zm00001d016041_P001 Maize extracellular 37.45 39.57
KRH48008 Soybean cytosol, peroxisome, plasma membrane 49.79 38.53
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 35.8 37.83
TraesCS1A01G346800.3 Wheat plasma membrane 39.09 37.7
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 35.8 37.5
Zm00001d020229_P001 Maize plasma membrane 23.46 37.5
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 39.92 37.31
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 46.5 36.93
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 39.51 36.78
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 39.09 36.54
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 39.09 36.54
HORVU3Hr1G030760.2 Barley mitochondrion 46.5 35.99
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 46.91 35.4
VIT_02s0025g00590.t01 Wine grape mitochondrion 8.64 35.0
EER89811 Sorghum peroxisome 36.63 34.77
Bra029827.1-P Field mustard plasma membrane 34.16 34.73
Os06t0503400-01 Rice plasma membrane 37.45 34.34
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 35.39 32.95
HORVU7Hr1G081290.4 Barley plastid 30.86 32.47
Bra037594.1-P Field mustard plasma membrane 29.63 32.14
Bra003171.1-P Field mustard plasma membrane 26.75 32.02
HORVU7Hr1G075700.2 Barley mitochondrion 38.68 31.33
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 25.51 30.24
Bra004291.1-P Field mustard plasma membrane 25.51 29.38
Bra035242.1-P Field mustard cytosol 22.22 27.0
Bra034153.1-P Field mustard plasma membrane 24.28 26.46
Bra001748.1-P Field mustard plastid 20.99 26.02
Bra029878.1-P Field mustard cytosol, peroxisome, plasma membrane 25.51 25.94
Bra040612.1-P Field mustard plasma membrane 18.93 25.14
GSMUA_Achr3P15760_001 Banana cytosol 14.81 24.0
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 23.05 22.95
Bra033951.1-P Field mustard plasma membrane 26.34 21.19
Bra039207.1-P Field mustard plasma membrane 15.64 18.27
Protein Annotations
EnsemblPlants:Bra037369.1EnsemblPlants:Bra037369.1-PEnsemblPlantsGene:Bra037369GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:Reticulonncoils:CoilPANTHER:PTHR10994PANTHER:PTHR10994:SF95PFAM:PF02453PFscan:PS50845
TMHMM:TMhelixUniParc:UPI0002541A3EUniProt:M4F8F7MapMan:13.7.2.1::
Description
AT4G01230 (E=2e-112) | reticulon family protein (RTNLB7)
Coordinates
chrA09:-:844123..845193
Molecular Weight (calculated)
27607.1 Da
IEP (calculated)
6.166
GRAVY (calculated)
0.234
Length
243 amino acids
Sequence
(BLAST)
001: MEKEEEKLER VGPLEEPLMK NIVPEEDSLS MSDTDSEIPD SPVPINAPIY RMFGRERPIH MVLGGGKPAD VLLWRDKKVT AGLVGAVTVI WLLFGFGHCR
101: LLTFVCRGSI LFLLLSFVWS NALNRSPEKI MEIYIPEKPL LQAASALTFE VNCALATLRS IALERDIKNF ALVVIGLWLV SIIGSWFSFL SLIYICFVLI
201: HTVPKLYEKY EDEIDPIAEK AVIEMKKHFQ VLEAKFLNKS HHH
Best Arabidopsis Sequence Match ( AT4G01230.2 )
(BLAST)
001: MEEEKLEIVG PLEEPLMGNI VPEEINGLDS LTSSDSDSEK PDSPVPINAP IYRMFGRERP IHMVLGGGKP ADVLLWRDKK VTLGLLSAVT VIWLLFGFGG
101: RRLLTSLCRG SILFLLLSFL WSNALNKSPE NMMDIYIPEK PLLQAASAMT FELNCAFATL RSIALERDIK NFVMAVIGLW LVSVIGNWFS FLSLLYICFV
201: LIHTVPMLYE KYEDEIDPIA EKAVIEMKKH YQVFEAKFLS KIPH
Arabidopsis Description
RTNLB7Reticulon-like protein B7 [Source:UniProtKB/Swiss-Prot;Acc:Q9M145]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.