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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, extracellular

Predictor Summary:
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, mitochondrion
Any Predictor:cytosol, nucleus, secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
 extracellular: 20408568
mitochondrion: 27297264
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004543_P001
Zm00001d007067_P003
Zm00001d008982_P001
Zm00001d010538_P005
Zm00001d010824_P001
Zm00001d012017_P002
Zm00001d012393_P004
Zm00001d012776_P001
Zm00001d013600_P001
Zm00001d013839_P001
Zm00001d015005_P002
Zm00001d015006_P004
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020624_P002
Zm00001d020729_P001
Zm00001d024925_P001
Zm00001d024933_P003
Zm00001d029226_P001
Zm00001d032442_P002
Zm00001d034638_P001
Zm00001d037453_P001
Zm00001d037747_P001
Zm00001d038380_P001
Zm00001d038768_P001
Zm00001d039182_P001
Zm00001d039316_P001
Zm00001d039455_P002
Zm00001d040209_P001
Zm00001d040435_P003
Zm00001d040734_P001
Zm00001d041267_P001
Zm00001d042329_P001
Zm00001d043551_P003
Zm00001d044089_P002
Zm00001d044412_P001
Zm00001d047446_P002
Zm00001d053686_P001
Zm00001d054017_P003

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Zm00001d010824_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d040734_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT4G11220.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT4G11220.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d037747_P001 AT1G55190.1 21798944
AT5G41600.1 Zm00001d039455_P002 AT1G55190.1 21798944
AT5G41600.1 Zm00001d040435_P003 AT1G77350.1 21798944
AT5G41600.1 Zm00001d015005_P002 AT2G03120.1 21798944
AT5G41600.1 Zm00001d015006_P004 AT2G03120.1 21798944
AT5G41600.1 Zm00001d054017_P003 AT2G03120.1 21798944
AT5G41600.1 Zm00001d013600_P001 AT2G39960.1 21798944
AT5G41600.1 Zm00001d020624_P002 AT2G39960.1 21798944
AT5G41600.1 Zm00001d024925_P001 AT2G46890.1 21798944
AT5G41600.1 Zm00001d039182_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044089_P002 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044412_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d004543_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d007067_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d024933_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d029226_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d047446_P002 AT3G07950.1 21798944
AT5G41600.1 Zm00001d012017_P002 AT3G27080.1 21798944
AT5G41600.1 Zm00001d040209_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d042329_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d010538_P005 AT3G46060.1 21798944
AT5G41600.1 Zm00001d034638_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d038380_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT5G41600.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d008982_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d012776_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d016041_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020229_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020729_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d037453_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d038768_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d039316_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d043551_P003 AT5G41600.1 21798944
AT5G41600.1 Zm00001d013839_P001 AT5G53560.1 21798944
AT5G41600.1 Zm00001d032442_P002 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES19841 Sorghum cytosol, nucleus, plasma membrane 96.46 96.08
Os05t0526400-01 Rice plasma membrane 86.22 87.25
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 83.46 85.14
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 83.07 85.08
Zm00001d012776_P001 Maize extracellular 82.28 82.61
Zm00001d043551_P003 Maize plasma membrane 83.46 82.49
Zm00001d020729_P001 Maize plasma membrane 29.92 80.0
Zm00001d020229_P001 Maize plasma membrane 46.46 77.63
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 67.32 67.86
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 66.54 66.27
TraesCS1A01G346800.3 Wheat plasma membrane 62.99 63.49
KRH41254 Soybean cytosol, nucleus, plasma membrane 63.39 63.39
Solyc03g007740.2.1 Tomato nucleus 62.99 62.75
KRH59988 Soybean mitochondrion 62.6 62.6
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 61.42 62.15
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 61.02 62.0
Solyc01g095200.2.1 Tomato plastid 64.17 61.98
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 62.2 61.96
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 61.42 61.66
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 61.42 61.66
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 61.81 61.57
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 64.17 61.51
CDY38194 Canola cytosol, nucleus, plasma membrane 60.24 61.2
KRH40357 Soybean endoplasmic reticulum 61.81 61.09
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 60.24 60.96
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 60.24 60.96
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 62.99 60.84
KRH00872 Soybean endoplasmic reticulum 61.81 60.62
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 59.45 60.4
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 61.02 60.31
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 66.14 60.22
CDX79993 Canola cytosol, peroxisome, plasma membrane 59.45 60.16
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 59.45 60.16
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 61.81 60.15
KRG99174 Soybean endoplasmic reticulum, plasma membrane 20.47 59.77
AT4G23630.2 Thale cress nucleus 64.57 59.64
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 63.39 59.63
KRH06560 Soybean endoplasmic reticulum 59.84 59.38
CDY42012 Canola cytosol, peroxisome, plasma membrane 58.66 59.36
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 59.45 59.22
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 62.6 58.89
Bra000739.1-P Field mustard cytosol 61.81 58.8
CDX90792 Canola cytosol, peroxisome, plasma membrane 61.42 58.43
Bra019285.1-P Field mustard cytosol 61.42 58.21
CDY10954 Canola cytosol 61.81 58.15
CDY52012 Canola cytosol, peroxisome, plasma membrane 57.48 57.48
CDY24806 Canola cytosol 61.81 57.3
CDY57657 Canola cytosol, nucleus, plasma membrane 61.81 57.09
CDY44123 Canola cytosol, nucleus, plasma membrane 61.81 56.88
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 60.63 56.83
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 56.69 56.69
CDY53913 Canola cytosol, peroxisome, plasma membrane 56.69 56.69
CDY41666 Canola cytosol 61.42 56.52
Bra013717.1-P Field mustard nucleus 61.42 56.52
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 56.3 56.52
Bra010539.1-P Field mustard cytosol 59.84 56.51
AT4G11220.1 Thale cress nucleus 59.06 55.35
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 66.14 54.9
KRH35223 Soybean cytosol, nucleus, plasma membrane 53.54 54.4
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 53.54 53.54
VIT_02s0025g00590.t01 Wine grape mitochondrion 12.6 53.33
CDY13240 Canola cytosol, peroxisome, plasma membrane 33.46 52.8
Zm00001d016041_P001 Maize extracellular 47.64 52.61
Zm00001d037848_P008 Maize endoplasmic reticulum, nucleus, peroxisome 51.18 51.59
KRH48008 Soybean cytosol, peroxisome, plasma membrane 61.81 50.0
CDY05135 Canola mitochondrion 60.24 48.88
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 48.82 47.51
CDY62522 Canola cytosol 14.57 46.25
AT4G01230.2 Thale cress cytosol 42.91 44.67
Bra037369.1-P Field mustard cytosol 40.55 42.39
CDY07184 Canola cytosol, peroxisome, plasma membrane 40.55 42.39
CDY48510 Canola cytosol 40.55 42.39
Zm00001d034313_P001 Maize cytosol, nucleus, plasma membrane 41.34 42.34
Zm00001d038910_P001 Maize plasma membrane 35.83 40.09
KRG91601 Soybean mitochondrion 52.36 39.12
Bra035242.1-P Field mustard cytosol 29.53 37.5
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 31.89 36.65
Zm00001d018781_P001 Maize extracellular, mitochondrion 35.04 36.63
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 25.2 35.56
CDX86802 Canola cytosol, nucleus, peroxisome 34.25 35.51
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 27.56 35.35
Zm00001d001901_P002 Maize plasma membrane 26.77 34.34
Zm00001d008590_P001 Maize plastid 17.72 33.83
Zm00001d042846_P001 Maize plasma membrane 26.38 31.9
CDX89122 Canola extracellular, mitochondrion 18.5 30.72
Zm00001d047517_P001 Maize peroxisome 26.77 29.82
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 20.87 22.65
Protein Annotations
EntrezGene:100191362MapMan:13.7.2.1ProteinID:AQK87764.1UniProt:B4F8J5EMBL:BT033433EMBL:BT055191
EMBL:EU967042GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF99InterPro:ReticulonTMHMM:TMhelixUniParc:UPI00017B63BAEnsemblPlantsGene:Zm00001d038768
EnsemblPlants:Zm00001d038768_P001EnsemblPlants:Zm00001d038768_T001SEG:seg:::
Description
Reticulon-like protein B4
Coordinates
chr6:+:164162505..164164754
Molecular Weight (calculated)
28345.6 Da
IEP (calculated)
8.908
GRAVY (calculated)
0.030
Length
254 amino acids
Sequence
(BLAST)
001: MAEQHKEESG VTVLDKISDK LHGRGGGSSS SSDSDDERSS ATAAVKAKIY RIFGREKPVH SVLGGGKPAD LFLWRNKRIS GGVLAGATAF WLLFEVMDYH
101: LLTLLCHCLI LTLAILFLWS NATTFINKSP PNIPEVKIPD DLAVNVARSL RYEINRGFAT LREIGQGHDL KKFLIVIAGL WILSVLGSCC NFLTLSYIVF
201: MVLYTVPVLY EKHEDKVDAF GEKAMVELKR YYAIFDEKCL SKIPKGPLKD KKQH
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.