Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91363 | Sorghum | cytosol | 71.43 | 97.01 |
| Os10t0518200-01 | Rice | plasma membrane, plastid | 47.8 | 83.65 |
| TraesCS1D01G184800.1 | Wheat | cytosol | 61.54 | 83.58 |
| TraesCS1A01G181500.1 | Wheat | cytosol, golgi | 60.99 | 82.84 |
| Zm00001d032442_P002 | Maize | cytosol | 60.44 | 79.14 |
| Bra022660.1-P | Field mustard | cytosol | 52.2 | 70.9 |
| CDX96233 | Canola | cytosol | 52.2 | 70.9 |
| VIT_16s0098g01230.t01 | Wine grape | cytosol | 52.2 | 70.9 |
| CDY28830 | Canola | cytosol | 52.2 | 70.9 |
| AT5G53560.1 | Thale cress | cytosol | 51.65 | 70.15 |
| PGSC0003DMT400013956 | Potato | cytosol | 51.65 | 70.15 |
| KRH64355 | Soybean | endoplasmic reticulum | 53.3 | 69.29 |
| PGSC0003DMT400047688 | Potato | cytosol | 50.0 | 67.91 |
| CDY14370 | Canola | cytosol | 53.85 | 62.82 |
| GSMUA_Achr1P04070_001 | Banana | cytosol | 45.6 | 62.41 |
| Zm00001d011081_P001 | Maize | plasma membrane, plastid | 45.05 | 61.65 |
| Zm00001d041963_P001 | Maize | plasma membrane | 43.41 | 58.52 |
| Zm00001d011786_P001 | Maize | plasma membrane | 43.41 | 58.52 |
| GSMUA_Achr4P30410_001 | Banana | cytosol, extracellular, mitochondrion | 52.2 | 58.28 |
| HORVU1Hr1G047990.4 | Barley | plastid | 60.44 | 54.73 |
| Zm00001d017425_P001 | Maize | cytosol | 40.66 | 53.24 |
| CDY20247 | Canola | mitochondrion | 53.85 | 51.58 |
| GSMUA_Achr11P... | Banana | cytosol | 37.36 | 51.52 |
| TraesCS1B01G199300.1 | Wheat | cytosol | 59.89 | 51.42 |
| KRH53581 | Soybean | endoplasmic reticulum | 54.4 | 50.77 |
| Solyc03g082600.2.1 | Tomato | plastid | 51.1 | 48.95 |
| GSMUA_Achr4P27140_001 | Banana | cytosol | 39.56 | 46.45 |
| Zm00001d023978_P001 | Maize | cytosol | 26.37 | 36.64 |
| Zm00001d034048_P003 | Maize | cytosol | 26.37 | 34.29 |
| Zm00001d032266_P001 | Maize | endoplasmic reticulum, extracellular | 20.88 | 32.2 |
| Zm00001d013257_P002 | Maize | plastid | 24.18 | 29.33 |
| Zm00001d035685_P001 | Maize | mitochondrion | 22.53 | 26.45 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | UniProt:A0A1D6GMM7 | ProteinID:AQK64536.1 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf |
| InterPro:Cyt_B5_heme-BS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0020037 | GO:GO:0046872 | InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 | PRINTS:PR00363 |
| ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF22 | SMART:SM01117 | SUPFAM:SSF55856 |
| TMHMM:TMhelix | UniParc:UPI000843ECA3 | EnsemblPlantsGene:Zm00001d013839 | EnsemblPlants:Zm00001d013839_P001 | EnsemblPlants:Zm00001d013839_T001 | SEG:seg |
Description
Cytochrome b5 isoform E
Coordinates
chr5:+:22102307..22104869
Molecular Weight (calculated)
20328.5 Da
IEP (calculated)
6.507
GRAVY (calculated)
0.006
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MASENKVFRF EEVAKHNVTK DCWIIIAGKV LFFCSSPILG SPSPLWWHRI LDGWRHAFGG FVGYGFVKLF GVLVGGMVYD VTPFMDEHPG GDEVLLAVTG
101: KDATADFEDI GHSDSARDMM EKYHIGQIDA STIPAKRTYV HPQQAPSHSD KNNDLLIKIL QFLVPIMILG LAFGIRQYTK SE
101: KDATADFEDI GHSDSARDMM EKYHIGQIDA STIPAKRTYV HPQQAPSHSD KNNDLLIKIL QFLVPIMILG LAFGIRQYTK SE
001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
Arabidopsis Description
CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.