Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013956 | Potato | cytosol | 85.82 | 85.82 |
| KRH64355 | Soybean | endoplasmic reticulum | 85.82 | 82.14 |
| AT5G53560.1 | Thale cress | cytosol | 82.09 | 82.09 |
| VIT_16s0098g01230.t01 | Wine grape | cytosol | 81.34 | 81.34 |
| Bra022660.1-P | Field mustard | cytosol | 80.6 | 80.6 |
| CDY28830 | Canola | cytosol | 80.6 | 80.6 |
| CDX96233 | Canola | cytosol | 80.6 | 80.6 |
| CDY14370 | Canola | cytosol | 80.6 | 69.23 |
| Os10t0518200-01 | Rice | plasma membrane, plastid | 53.73 | 69.23 |
| Solyc03g082600.2.1 | Tomato | plastid | 97.76 | 68.95 |
| TraesCS1D01G184800.1 | Wheat | cytosol | 68.66 | 68.66 |
| TraesCS1A01G181500.1 | Wheat | cytosol, golgi | 67.91 | 67.91 |
| GSMUA_Achr1P04070_001 | Banana | cytosol | 67.16 | 67.67 |
| PGSC0003DMT400051945 | Potato | cytosol | 66.42 | 67.42 |
| EER91363 | Sorghum | cytosol | 67.16 | 67.16 |
| PGSC0003DMT400003091 | Potato | cytosol | 65.67 | 65.19 |
| PGSC0003DMT400045531 | Potato | cytosol | 62.69 | 63.16 |
| PGSC0003DMT400000362 | Potato | cytosol | 59.7 | 60.61 |
| KRH53581 | Soybean | endoplasmic reticulum | 86.57 | 59.49 |
| GSMUA_Achr4P30410_001 | Banana | cytosol, extracellular, mitochondrion | 70.9 | 58.28 |
| CDY20247 | Canola | mitochondrion | 79.85 | 56.32 |
| GSMUA_Achr11P... | Banana | cytosol | 55.22 | 56.06 |
| Zm00001d032442_P002 | Maize | cytosol | 56.72 | 54.68 |
| Zm00001d013839_P001 | Maize | plasma membrane | 67.91 | 50.0 |
| GSMUA_Achr4P27140_001 | Banana | cytosol | 53.73 | 46.45 |
| HORVU1Hr1G047990.4 | Barley | plastid | 67.16 | 44.78 |
| TraesCS1B01G199300.1 | Wheat | cytosol | 67.91 | 42.92 |
| PGSC0003DMT400019916 | Potato | cytosol | 44.78 | 42.25 |
| PGSC0003DMT400072748 | Potato | cytosol | 41.04 | 41.35 |
| PGSC0003DMT400055458 | Potato | cytosol | 33.58 | 30.61 |
Protein Annotations
| EntrezGene:107061245 | MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 |
| GO:GO:0046872 | InterPro:IPR001199 | InterPro:IPR036400 | UniProt:M1BL96 | PFAM:PF00173 | EnsemblPlantsGene:PGSC0003DMG400018534 |
| PGSC:PGSC0003DMG400018534 | EnsemblPlants:PGSC0003DMT400047688 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 |
| PANTHER:PTHR19359:SF22 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI00029631A6 | RefSeq:XP_015165604.1 |
| SEG:seg | : | : | : | : | : |
Description
Cytochome b5 [Source:PGSC_GENE;Acc:PGSC0003DMG400018534]
Coordinates
chr3:-:47854327..47857879
Molecular Weight (calculated)
15206.2 Da
IEP (calculated)
4.967
GRAVY (calculated)
-0.353
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDRKLHAF EEVAKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSA TGKDATNDFE DVGHSDSARE MMDKYYIGEI DMSTVPLKRA YIPSEQTAYN
101: PDKTPEFIIK ILQFLLPILI LGLALTVRHY TKEQ
101: PDKTPEFIIK ILQFLLPILI LGLALTVRHY TKEQ
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.