CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX78905
CDX89063
CDX89333
CDX94330
CDX98596
CDX99411
CDY01565
CDY25984
CDY28973
CDY40569
CDY41153
CDY43441
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53560.1	CDX67837	AT3G60600.1	21798944
AT5G53560.1	CDX71796	AT3G60600.1	21798944
AT5G53560.1	CDX89063	AT3G60600.1	21798944
AT5G53560.1	CDY41153	AT3G60600.1	21798944
AT5G53560.1	CDY48365	AT3G60600.1	21798944
AT5G53560.1	CDX78905	AT4G19030.1	21798944
AT5G53560.1	CDX98596	AT4G19030.1	21798944
AT5G53560.1	CDX99411	AT4G19030.1	21798944
AT5G53560.1	CDY01565	AT4G19030.1	21798944
AT5G53560.1	CDX89333	AT4G26455.1	21798944
AT5G53560.1	CDX94330	AT4G26455.1	21798944
AT5G53560.1	CDY25984	AT5G47120.1	19054355
AT5G53560.1	CDY28973	AT5G47120.1	19054355
AT5G53560.1	CDY40569	AT5G47120.1	19054355
AT5G53560.1	CDY43441	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022660.1-P	Field mustard	cytosol	67.89	96.27
CDY28830	Canola	cytosol	67.89	96.27
CDX96233	Canola	cytosol	67.89	96.27
CDY14370	Canola	cytosol	76.84	93.59
AT5G53560.1	Thale cress	cytosol	64.21	91.04
VIT_16s0098g01230.t01	Wine grape	cytosol	56.84	80.6
PGSC0003DMT400047688	Potato	cytosol	56.32	79.85
CDY47080	Canola	cytosol	55.79	79.1
KRH64355	Soybean	endoplasmic reticulum	57.89	78.57
PGSC0003DMT400013956	Potato	cytosol	53.68	76.12
EER91363	Sorghum	cytosol	51.58	73.13
Os10t0518200-01	Rice	plasma membrane, plastid	39.47	72.12
TraesCS1D01G184800.1	Wheat	cytosol	50.53	71.64
TraesCS1A01G181500.1	Wheat	cytosol, golgi	50.0	70.9
CDY23792	Canola	cytosol	46.84	66.42
CDY19161	Canola	cytosol	46.32	65.67
CDX84725	Canola	cytosol	46.32	65.67
CDX79471	Canola	cytosol	46.32	65.67
CDY59638	Canola	cytosol	45.26	64.18
CDX86279	Canola	cytosol	45.26	62.32
GSMUA_Achr1P04070_001	Banana	cytosol	43.16	61.65
CDX85364	Canola	cytosol	44.74	61.59
Solyc03g082600.2.1	Tomato	plastid	61.05	61.05
KRH53581	Soybean	endoplasmic reticulum	62.11	60.51
CDY19937	Canola	cytosol	44.21	60.0
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	51.05	59.51
Zm00001d032442_P002	Maize	cytosol	43.16	58.99
CDY00045	Canola	cytosol	42.63	57.86
CDY12180	Canola	cytosol	46.84	57.05
GSMUA_Achr11P...	Banana	cytosol	37.89	54.55
Zm00001d013839_P001	Maize	plasma membrane	51.58	53.85
CDY47078	Canola	nucleus	32.11	51.69
GSMUA_Achr4P27140_001	Banana	cytosol	40.53	49.68
CDY61721	Canola	cytosol	34.74	49.25
CDY27310	Canola	cytosol	34.74	49.25
CDX80035	Canola	cytosol	33.16	47.01
HORVU1Hr1G047990.4	Barley	plastid	49.47	46.77
CDY41545	Canola	cytosol	32.63	46.27
TraesCS1B01G199300.1	Wheat	cytosol	50.0	44.81
CDY16153	Canola	cytosol	31.58	44.44
CDX85016	Canola	cytosol	31.05	43.7
CDY34133	Canola	endoplasmic reticulum, extracellular, golgi	18.95	29.51
CDY24550	Canola	extracellular, golgi, vacuole	18.42	28.93
CDY46984	Canola	endoplasmic reticulum	19.47	28.03
CDY44610	Canola	endoplasmic reticulum	12.11	27.38
CDY61511	Canola	endoplasmic reticulum, golgi	11.58	26.19

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	GO:A0A078G5K9	UniProt:A0A078G5K9	EnsemblPlants:CDY20247	ProteinID:CDY20247
ProteinID:CDY20247.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00010197001
InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255
PANTHER:PTHR19359	PANTHER:PTHR19359:SF22	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI0004EDE939
SEG:seg	:	:	:	:	:

Description

BnaC09g29920DBnaC09g29920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5K9]

Coordinates

chrLK032104:-:642768..645474

Molecular Weight (calculated)

21688.3 Da

IEP (calculated)

9.228

GRAVY (calculated)

-0.317

Length

190 amino acids

Sequence
(BLAST)

001: MTKLYKTKNK TKQKTFKFFL SFFLQSKFLT LVTPRGAIAI LNLKAERSPT FDLRREMASE KKVLGFEEVS QHNKTKDCWL IISGKVYDVT PFMDDHPGGD
101: EVLLSSTGKD ATNDFEDVGH SDTARDMMEK YYIGEIDSST VPATRTYVAP VQPAYNQDKT PEFMIKILQF LVPILILGLA LVVRQYTKKE

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.