Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46650.1 | CDY25984 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | CDY28973 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | CDY40569 | AT5G47120.1 | 19054355 |
| AT2G46650.1 | CDY43441 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27310 | Canola | cytosol | 100.0 | 100.0 |
| Bra039268.1-P | Field mustard | cytosol | 99.25 | 99.25 |
| CDY41545 | Canola | cytosol | 94.78 | 94.78 |
| CDX80035 | Canola | cytosol | 94.03 | 94.03 |
| AT2G46650.1 | Thale cress | cytosol | 82.84 | 84.09 |
| KRG97223 | Soybean | endoplasmic reticulum | 52.24 | 49.65 |
| CDY47080 | Canola | cytosol | 49.25 | 49.25 |
| CDX96233 | Canola | cytosol | 48.51 | 48.51 |
| CDY28830 | Canola | cytosol | 48.51 | 48.51 |
| KRH68944 | Soybean | cytosol | 49.25 | 46.81 |
| CDY19937 | Canola | cytosol | 47.76 | 45.71 |
| CDY59638 | Canola | cytosol | 45.52 | 45.52 |
| CDX79471 | Canola | cytosol | 45.52 | 45.52 |
| CDY00045 | Canola | cytosol | 47.01 | 45.0 |
| CDX86279 | Canola | cytosol | 46.27 | 44.93 |
| CDX85364 | Canola | cytosol | 46.27 | 44.93 |
| CDX84725 | Canola | cytosol | 44.78 | 44.78 |
| Os02t0649800-01 | Rice | plasma membrane | 45.52 | 44.2 |
| CDY19161 | Canola | cytosol | 44.03 | 44.03 |
| CDY23792 | Canola | cytosol | 44.03 | 44.03 |
| TraesCS6A01G240700.1 | Wheat | cytosol, golgi, mitochondrion | 46.27 | 43.97 |
| TraesCS6B01G284000.1 | Wheat | cytosol | 45.52 | 42.96 |
| TraesCS6D01G222900.1 | Wheat | cytosol | 45.52 | 42.96 |
| KRH47845 | Soybean | endoplasmic reticulum | 45.52 | 42.96 |
| KRH06410 | Soybean | cytosol | 46.27 | 42.47 |
| CDY14370 | Canola | cytosol | 49.25 | 42.31 |
| Zm00001d017425_P001 | Maize | cytosol | 42.54 | 41.01 |
| CDX85016 | Canola | cytosol | 40.3 | 40.0 |
| CDY16153 | Canola | cytosol | 39.55 | 39.26 |
| CDY12180 | Canola | cytosol | 45.52 | 39.1 |
| Solyc06g053170.2.1 | Tomato | cytosol, plastid | 11.19 | 38.46 |
| CDY47078 | Canola | nucleus | 32.84 | 37.29 |
| HORVU6Hr1G061420.4 | Barley | cytosol | 44.03 | 36.2 |
| CDY20247 | Canola | mitochondrion | 49.25 | 34.74 |
| OQU85747 | Sorghum | mitochondrion | 41.79 | 26.17 |
| CDY46984 | Canola | endoplasmic reticulum | 24.63 | 25.0 |
| CDY24550 | Canola | extracellular, golgi, vacuole | 22.39 | 24.79 |
| CDY34133 | Canola | endoplasmic reticulum, extracellular, golgi | 22.39 | 24.59 |
| CDY61511 | Canola | endoplasmic reticulum, golgi | 14.93 | 23.81 |
| CDY44610 | Canola | endoplasmic reticulum | 14.93 | 23.81 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | GO:A0A078GL41 | UniProt:A0A078GL41 | ProteinID:CDY27310.1 | EnsemblPlants:CDY61721 |
| ProteinID:CDY61721 | ProteinID:CDY61721.1 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00034269001 | InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 |
| PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF43 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix |
| UniParc:UPI0004EDFE83 | : | : | : | : | : |
Description
BnaA04g27110DBnaA04g27110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL41]
Coordinates
chrLK034032:-:9857..10849
Molecular Weight (calculated)
15104.0 Da
IEP (calculated)
6.347
GRAVY (calculated)
-0.340
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLISFHDV AKHKCKNDCW ILIHGKVYDV SSFIDEHPGG DNVLLAVTGK DASTDFDDVN HSNEAKETMK KYYIGDVDKS TVPVTAKYIP PWEKESTAET
101: TKDESGNKML VYLVPLLILG VAFFLRFYNN KQTT
101: TKDESGNKML VYLVPLLILG VAFFLRFYNN KQTT
001: MANLISFHDV AKHKCKNDCW ILIHGKVYDI STFMDEHPGG DNVLLAVTGK DASIDFEDVN HSKDAKELMK KYCIGDVDQS TVPVTQQYIP PWEKESTAAE
101: TTKEESGKKL LIYLIPLLIL GVAFALRFYN NK
101: TTKEESGKKL LIYLIPLLIL GVAFALRFYN NK
Arabidopsis Description
CYTB5-CCytochrome B5 isoform C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNV4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.