Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48810.1 | CDY25984 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY28973 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY40569 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY43441 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037461.1-P | Field mustard | cytosol | 99.28 | 99.28 |
| CDX85364 | Canola | cytosol | 97.83 | 97.83 |
| CDY19937 | Canola | cytosol | 92.03 | 90.71 |
| CDY00045 | Canola | cytosol | 92.03 | 90.71 |
| AT5G48810.1 | Thale cress | cytosol | 86.23 | 85.0 |
| PGSC0003DMT400045531 | Potato | cytosol | 71.74 | 74.44 |
| Solyc09g061230.2.1 | Tomato | cytosol | 71.01 | 73.68 |
| PGSC0003DMT400003091 | Potato | cytosol | 70.29 | 71.85 |
| Solyc06g007930.2.1 | Tomato | cytosol, endoplasmic reticulum, plastid, unclear | 69.57 | 71.11 |
| PGSC0003DMT400051945 | Potato | cytosol | 66.67 | 69.7 |
| TraesCS5D01G152500.1 | Wheat | golgi | 67.39 | 69.4 |
| Solyc06g083440.2.1 | Tomato | cytosol | 66.67 | 69.17 |
| TraesCS5A01G138900.1 | Wheat | cytosol, golgi | 66.67 | 68.66 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 66.67 | 68.66 |
| Os05t0108800-01 | Rice | plasma membrane | 68.12 | 68.61 |
| KRG99574 | Soybean | cytosol, endoplasmic reticulum | 66.67 | 68.15 |
| CDX84725 | Canola | cytosol | 65.94 | 67.91 |
| CDY59638 | Canola | cytosol | 65.94 | 67.91 |
| CDX79471 | Canola | cytosol | 65.94 | 67.91 |
| HORVU5Hr1G045040.1 | Barley | cytosol, plasma membrane | 65.94 | 67.91 |
| TraesCS3A01G524000.2 | Wheat | cytosol, golgi, plastid | 67.39 | 67.88 |
| EES17559 | Sorghum | cytosol | 65.22 | 67.67 |
| VIT_07s0005g06290.t01 | Wine grape | cytosol | 65.22 | 67.67 |
| KRH66053 | Soybean | endoplasmic reticulum | 65.94 | 67.41 |
| TraesCS5B01G138200.1 | Wheat | cytosol, golgi | 65.22 | 67.16 |
| CDY23792 | Canola | cytosol | 65.22 | 67.16 |
| CDY19161 | Canola | cytosol | 65.22 | 67.16 |
| TraesCS3D01G529500.1 | Wheat | cytosol, golgi, unclear | 66.67 | 67.15 |
| EES02143 | Sorghum | cytosol | 65.22 | 66.67 |
| Os01t0971500-01 | Rice | cytosol, plasma membrane | 65.22 | 66.67 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 62.32 | 64.18 |
| CDX96233 | Canola | cytosol | 61.59 | 63.43 |
| CDY28830 | Canola | cytosol | 61.59 | 63.43 |
| CDY47080 | Canola | cytosol | 58.7 | 60.45 |
| CDY12180 | Canola | cytosol | 65.94 | 58.33 |
| CDY14370 | Canola | cytosol | 62.32 | 55.13 |
| HORVU3Hr1G114360.3 | Barley | plasma membrane | 66.67 | 53.18 |
| CDY61721 | Canola | cytosol | 44.93 | 46.27 |
| CDY27310 | Canola | cytosol | 44.93 | 46.27 |
| CDY20247 | Canola | mitochondrion | 62.32 | 45.26 |
| CDX80035 | Canola | cytosol | 42.03 | 43.28 |
| CDY47078 | Canola | nucleus | 36.96 | 43.22 |
| CDY41545 | Canola | cytosol | 41.3 | 42.54 |
| CDY16153 | Canola | cytosol | 39.13 | 40.0 |
| CDX85016 | Canola | cytosol | 39.13 | 40.0 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 57.25 | 32.24 |
| Zm00001d035685_P001 | Maize | mitochondrion | 33.33 | 29.68 |
| CDY24550 | Canola | extracellular, golgi, vacuole | 21.01 | 23.97 |
| CDY34133 | Canola | endoplasmic reticulum, extracellular, golgi | 21.01 | 23.77 |
| CDY46984 | Canola | endoplasmic reticulum | 22.46 | 23.48 |
| CDY61511 | Canola | endoplasmic reticulum, golgi | 13.04 | 21.43 |
| CDY44610 | Canola | endoplasmic reticulum | 13.04 | 21.43 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | GO:A0A078DD66 | EnsemblPlants:CDX86279 | ProteinID:CDX86279 | ProteinID:CDX86279.1 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0020037 |
| EnsemblPlantsGene:GSBRNA2T00144391001 | InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 |
| PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF69 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix |
| UniParc:UPI0004EED8B1 | SEG:seg | : | : | : | : |
Description
BnaA06g29960D
Coordinates
chrLK031845:-:748598..749667
Molecular Weight (calculated)
14985.5 Da
IEP (calculated)
4.335
GRAVY (calculated)
-0.267
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGDGKVFTL EEVSQHTSNQ DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DSATVPAKTK FVPPPSNQTQ
101: SNQNKSSDFL IKILQFLVPL LILGLALGIR SYTKTPSS
101: SNQNKSSDFL IKILQFLVPL LILGLALGIR SYTKTPSS
001: MGGDGKVFTL SEVSQHSSAK DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPVKAK FVPPTSTKAV
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
Arabidopsis Description
CYTB5-DCytochrome B5 isoform D [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWT2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.