Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
23128297
golgi: 25769308 mitochondrion: 26136264 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26136264
doi
College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1D01G018500.1 | cytosol |
| TraesCS5A01G019200.1 | cytosol, nucleus |
| TraesCS5A01G416500.2 | cytosol, nucleus |
| TraesCS5B01G016700.1 | cytosol, nucleus |
| TraesCS5B01G418800.1 | cytosol, nucleus |
| TraesCS5D01G024600.1 | cytosol, nucleus |
| TraesCS5D01G424200.1 | cytosol, nucleus |
| TraesCS6A01G083200.1 | cytosol |
| TraesCS6B01G113900.1 | cytosol |
| TraesCS6D01G077000.1 | cytosol |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G138900.1 | Wheat | cytosol, golgi | 97.01 | 97.01 |
| TraesCS5B01G138200.1 | Wheat | cytosol, golgi | 94.78 | 94.78 |
| HORVU5Hr1G045040.1 | Barley | cytosol, plasma membrane | 94.78 | 94.78 |
| Os01t0971500-01 | Rice | cytosol, plasma membrane | 89.55 | 88.89 |
| Zm00001d011786_P001 | Maize | plasma membrane | 86.57 | 85.93 |
| Zm00001d041963_P001 | Maize | plasma membrane | 85.82 | 85.19 |
| EES02143 | Sorghum | cytosol | 85.07 | 84.44 |
| TraesCS3D01G529500.1 | Wheat | cytosol, golgi, unclear | 81.34 | 79.56 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 77.61 | 77.61 |
| VIT_07s0005g06290.t01 | Wine grape | cytosol | 75.37 | 75.94 |
| PGSC0003DMT400051945 | Potato | cytosol | 74.63 | 75.76 |
| Bra022898.1-P | Field mustard | cytosol | 75.37 | 75.37 |
| KRG99574 | Soybean | cytosol, endoplasmic reticulum | 75.37 | 74.81 |
| CDX79471 | Canola | cytosol | 74.63 | 74.63 |
| AT2G32720.1 | Thale cress | cytosol | 74.63 | 74.63 |
| CDY23792 | Canola | cytosol | 74.63 | 74.63 |
| CDX84725 | Canola | cytosol | 74.63 | 74.63 |
| PGSC0003DMT400045531 | Potato | cytosol | 73.88 | 74.44 |
| CDY19161 | Canola | cytosol | 73.88 | 73.88 |
| Bra005564.1-P | Field mustard | cytosol | 73.88 | 73.88 |
| Bra021809.1-P | Field mustard | cytosol | 73.88 | 73.88 |
| KRH66053 | Soybean | endoplasmic reticulum | 73.88 | 73.33 |
| CDY59638 | Canola | cytosol | 73.13 | 73.13 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 73.13 | 73.13 |
| PGSC0003DMT400003091 | Potato | cytosol | 72.39 | 71.85 |
| CDX85364 | Canola | cytosol | 69.4 | 67.39 |
| CDX86279 | Canola | cytosol | 69.4 | 67.39 |
| Bra037461.1-P | Field mustard | cytosol | 68.66 | 66.67 |
| Bra036160.1-P | Field mustard | cytosol | 69.4 | 66.43 |
| CDY19937 | Canola | cytosol | 69.4 | 66.43 |
| CDY00045 | Canola | cytosol | 68.66 | 65.71 |
| KRG99780 | Soybean | cytosol | 66.42 | 64.49 |
| AT5G48810.1 | Thale cress | cytosol | 66.42 | 63.57 |
| CDY12180 | Canola | cytosol | 73.13 | 62.82 |
| KRH46744 | Soybean | endoplasmic reticulum | 65.67 | 61.97 |
| TraesCS1D01G184800.1 | Wheat | cytosol | 56.72 | 56.72 |
| Solyc06g053180.2.1 | Tomato | plastid | 31.34 | 49.41 |
| PGSC0003DMT400019916 | Potato | cytosol | 44.03 | 41.55 |
| TraesCS6D01G222900.1 | Wheat | cytosol | 44.03 | 41.55 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 69.4 | 37.96 |
| TraesCS5D01G401800.1 | Wheat | cytosol | 32.09 | 31.85 |
| TraesCS7D01G427500.1 | Wheat | mitochondrion, plastid | 40.3 | 24.22 |
| TraesCS5D01G190900.1 | Wheat | endoplasmic reticulum, extracellular | 20.9 | 23.73 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G152500.1 | EnsemblPlantsGene:TraesCS5D01G152500 | Gene3D:3.10.120.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0020037 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | InterPro:IPR001199 | InterPro:IPR036400 | PANTHER:PTHR19359 |
| PANTHER:PTHR19359:SF66 | PFAM:PF00173 | PFscan:PS50255 | PRINTS:PR00363 | ScanProsite:PS00191 | SMART:SM01117 |
| SUPFAM:SSF55856 | TMHMM:TMhelix | MapMan:21.9.1.7.1.3 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:241358069..241360048
Molecular Weight (calculated)
14818.6 Da
IEP (calculated)
4.919
GRAVY (calculated)
-0.241
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKAALTLEE VSKHNTKDDC WLIIAGKVYN VTKFLEDHPG GDDVLLSSTA KDATDDFEDV GHSSTARAML DEYYVGDIDT ATIPARTKYA PPKQPHYNQD
101: KTPEFIIKIL QFLVPLAILG LAVAIRMYTK SESA
101: KTPEFIIKIL QFLVPLAILG LAVAIRMYTK SESA
001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
Arabidopsis Description
CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.