Factsheet for GSMUA_AchrUn_randomP11830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
vacuole 2
extracellular 1
endoplasmic reticulum 3
plasma membrane 2
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...	cytosol, nucleus
GSMUA_Achr11P...	cytosol, nucleus
GSMUA_Achr2P10740_001	cytosol, nucleus
GSMUA_Achr2P10760_001	cytosol, nucleus
GSMUA_Achr6P36970_001	cytosol
GSMUA_Achr7P07470_001	cytosol
GSMUA_Achr8P14090_001	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr2P10740_001	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr2P10760_001	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr8P14090_001	AT2G34770.1	19054355
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr2P10740_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr2P10760_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr8P14090_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr11P...	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr2P10740_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr2P10760_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr8P14090_001	AT2G34770.1	22635113
AT2G32720.1	GSMUA_Achr6P36970_001	AT5G47120.1	19054355
AT2G32720.1	GSMUA_Achr7P07470_001	AT5G47120.1	19054355
AT2G32720.1	GSMUA_Achr6P36970_001	AT5G47120.1	19054355
AT2G32720.1	GSMUA_Achr7P07470_001	AT5G47120.1	19054355
AT5G48810.1	GSMUA_Achr6P36970_001	AT5G47120.1	19054355
AT5G48810.1	GSMUA_Achr7P07470_001	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06700_001	Banana	cytosol	41.63	76.12
GSMUA_Achr3P19410_001	Banana	cytosol	41.63	76.12
KRG99574	Soybean	cytosol, endoplasmic reticulum	40.41	73.33
Zm00001d041963_P001	Maize	plasma membrane	40.41	73.33
VIT_07s0005g06290.t01	Wine grape	cytosol	39.59	72.93
Zm00001d011786_P001	Maize	plasma membrane	40.0	72.59
Zm00001d011081_P001	Maize	plasma membrane, plastid	39.18	72.18
EES17559	Sorghum	cytosol	39.18	72.18
KRH66053	Soybean	endoplasmic reticulum	39.59	71.85
Os01t0971500-01	Rice	cytosol, plasma membrane	39.59	71.85
EES02143	Sorghum	cytosol	39.59	71.85
PGSC0003DMT400051945	Potato	cytosol	38.37	71.21
AT2G32720.1	Thale cress	cytosol	38.78	70.9
TraesCS5A01G138900.1	Wheat	cytosol, golgi	38.78	70.9
CDY59638	Canola	cytosol	38.78	70.9
Os05t0108800-01	Rice	plasma membrane	39.59	70.8
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	38.37	70.15
Bra005564.1-P	Field mustard	cytosol	38.37	70.15
TraesCS5D01G152500.1	Wheat	golgi	37.96	69.4
TraesCS5B01G138200.1	Wheat	cytosol, golgi	37.96	69.4
PGSC0003DMT400045531	Potato	cytosol	37.55	69.17
PGSC0003DMT400003091	Potato	cytosol	37.96	68.89
CDX79471	Canola	cytosol	37.55	68.66
Bra021809.1-P	Field mustard	cytosol	37.55	68.66
CDY23792	Canola	cytosol	37.55	68.66
CDY19161	Canola	cytosol	37.55	68.66
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	38.37	68.61
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	38.37	68.61
CDX84725	Canola	cytosol	37.14	67.91
Bra022898.1-P	Field mustard	cytosol	37.14	67.91
CDY12180	Canola	cytosol	40.41	63.46
KRG99780	Soybean	cytosol	33.06	58.7
CDX85364	Canola	cytosol	32.65	57.97
AT5G48810.1	Thale cress	cytosol	33.06	57.86
Bra036160.1-P	Field mustard	cytosol	33.06	57.86
CDY19937	Canola	cytosol	33.06	57.86
CDX86279	Canola	cytosol	32.24	57.25
HORVU3Hr1G114360.3	Barley	plasma membrane	40.0	56.65
Bra037461.1-P	Field mustard	cytosol	31.84	56.52
CDY00045	Canola	cytosol	32.24	56.43
KRH46744	Soybean	endoplasmic reticulum	31.84	54.93
GSMUA_Achr1P04070_001	Banana	cytosol	28.98	53.38
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	33.88	50.92
GSMUA_Achr11P...	Banana	cytosol	26.94	50.0
PGSC0003DMT400019916	Potato	cytosol	25.31	43.66
Solyc06g053180.2.1	Tomato	plastid	15.1	43.53
GSMUA_Achr2P13570_001	Banana	cytosol	20.41	37.59
GSMUA_Achr3P16820_001	Banana	cytosol	20.82	36.96
GSMUA_Achr4P27140_001	Banana	cytosol	23.27	36.77
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	21.63	35.57
GSMUA_Achr6P28600_001	Banana	cytosol, golgi, peroxisome	19.18	34.81
GSMUA_Achr9P05320_001	Banana	endoplasmic reticulum, plasma membrane	13.06	21.92

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	ncoils:Coil	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
GO:GO:0046872	EnsemblPlantsGene:GSMUA_AchrUn_randomG11830_001	EnsemblPlants:GSMUA_AchrUn_randomP11830_001	EnsemblPlants:GSMUA_AchrUn_randomT11830_001	InterPro:IPR001199	InterPro:IPR036400
UniProt:M0U8E2	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359
PANTHER:PTHR19359:SF66	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI000295C1FD	SEG:seg

Description

Cytochrome b5 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG11830_001]

Coordinates

chrchrUn_random:+:56651109..56659013

Molecular Weight (calculated)

27513.9 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.401

Length

245 amino acids

Sequence
(BLAST)

001: MARPSFGCRG ASLIASVGIA IIAYLRSSIH VEKEKEEQKP YANNFQGRRE TSEEEEEEEG KKKEERQKDY NLKRWVGRTS LFFFTLFSDG ISCISAYKGG
101: QCSPNPPHPT RSREMGKIYT LAEVLTHNSP KDCWLIINGK VFDVTKFLED HPGGEEVLLA SIGKDASVDF EDIGHSTTAR AMMDEYCVGE IDVATIPKRV
201: KYTPPKQPHY SQDKTAEFII RLLQFLVPLA ILGLAVAVRF CTKSS

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.