Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48810.1 | CDY25984 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY28973 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY40569 | AT5G47120.1 | 19054355 |
| AT5G48810.1 | CDY43441 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19937 | Canola | cytosol | 95.71 | 95.71 |
| CDX86279 | Canola | cytosol | 90.71 | 92.03 |
| CDX85364 | Canola | cytosol | 88.57 | 89.86 |
| AT5G48810.1 | Thale cress | cytosol | 83.57 | 83.57 |
| PGSC0003DMT400045531 | Potato | cytosol | 70.71 | 74.44 |
| Solyc09g061230.2.1 | Tomato | cytosol | 70.0 | 73.68 |
| VIT_07s0005g06290.t01 | Wine grape | cytosol | 65.71 | 69.17 |
| PGSC0003DMT400003091 | Potato | cytosol | 66.43 | 68.89 |
| Solyc06g007930.2.1 | Tomato | cytosol, endoplasmic reticulum, plastid, unclear | 66.43 | 68.89 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 65.71 | 68.66 |
| TraesCS5D01G152500.1 | Wheat | golgi | 65.71 | 68.66 |
| PGSC0003DMT400051945 | Potato | cytosol | 64.29 | 68.18 |
| KRG99574 | Soybean | cytosol, endoplasmic reticulum | 65.71 | 68.15 |
| TraesCS5A01G138900.1 | Wheat | cytosol, golgi | 65.0 | 67.91 |
| Solyc06g083440.2.1 | Tomato | cytosol | 64.29 | 67.67 |
| KRH66053 | Soybean | endoplasmic reticulum | 65.0 | 67.41 |
| HORVU5Hr1G045040.1 | Barley | cytosol, plasma membrane | 64.29 | 67.16 |
| Os05t0108800-01 | Rice | plasma membrane | 65.71 | 67.15 |
| CDX79471 | Canola | cytosol | 63.57 | 66.42 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 63.57 | 66.42 |
| CDY59638 | Canola | cytosol | 63.57 | 66.42 |
| CDX84725 | Canola | cytosol | 63.57 | 66.42 |
| EES02143 | Sorghum | cytosol | 63.57 | 65.93 |
| TraesCS5B01G138200.1 | Wheat | cytosol, golgi | 62.86 | 65.67 |
| CDY19161 | Canola | cytosol | 62.86 | 65.67 |
| CDY23792 | Canola | cytosol | 62.86 | 65.67 |
| EES17559 | Sorghum | cytosol | 62.14 | 65.41 |
| Os01t0971500-01 | Rice | cytosol, plasma membrane | 62.86 | 65.19 |
| TraesCS3A01G524000.2 | Wheat | cytosol, golgi, plastid | 62.86 | 64.23 |
| TraesCS3D01G529500.1 | Wheat | cytosol, golgi, unclear | 62.14 | 63.5 |
| CDY28830 | Canola | cytosol | 57.86 | 60.45 |
| CDX96233 | Canola | cytosol | 57.86 | 60.45 |
| CDY12180 | Canola | cytosol | 63.57 | 57.05 |
| CDY47080 | Canola | cytosol | 54.29 | 56.72 |
| CDY14370 | Canola | cytosol | 57.86 | 51.92 |
| HORVU3Hr1G114360.3 | Barley | plasma membrane | 62.14 | 50.29 |
| CDY61721 | Canola | cytosol | 45.0 | 47.01 |
| CDY27310 | Canola | cytosol | 45.0 | 47.01 |
| CDX80035 | Canola | cytosol | 42.14 | 44.03 |
| CDY41545 | Canola | cytosol | 41.43 | 43.28 |
| CDY20247 | Canola | mitochondrion | 57.86 | 42.63 |
| CDY47078 | Canola | nucleus | 35.71 | 42.37 |
| CDY16153 | Canola | cytosol | 38.57 | 40.0 |
| CDX85016 | Canola | cytosol | 38.57 | 40.0 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 56.43 | 32.24 |
| Zm00001d035685_P001 | Maize | mitochondrion | 32.86 | 29.68 |
| CDY24550 | Canola | extracellular, golgi, vacuole | 21.43 | 24.79 |
| CDY34133 | Canola | endoplasmic reticulum, extracellular, golgi | 21.43 | 24.59 |
| CDY46984 | Canola | endoplasmic reticulum | 22.86 | 24.24 |
| CDY61511 | Canola | endoplasmic reticulum, golgi | 13.57 | 22.62 |
| CDY44610 | Canola | endoplasmic reticulum | 13.57 | 22.62 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | GO:A0A078ED92 | EnsemblPlants:CDY00045 | ProteinID:CDY00045 | ProteinID:CDY00045.1 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0020037 |
| EnsemblPlantsGene:GSBRNA2T00109532001 | InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 |
| PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF69 | SMART:SM01117 | SUPFAM:SSF55856 | UniParc:UPI0004EAC0EE |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g02560D
Coordinates
chrLK031916:-:459037..459990
Molecular Weight (calculated)
15057.7 Da
IEP (calculated)
4.362
GRAVY (calculated)
-0.201
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGDGKVYTL AEVSQHTTAQ DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTAAVPAKTK FVPPPSPKQT
101: ESDQSKSSDF LVKILQFLVP LLILGLALGI RSYTKTPSSS
101: ESDQSKSSDF LVKILQFLVP LLILGLALGI RSYTKTPSSS
001: MGGDGKVFTL SEVSQHSSAK DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPVKAK FVPPTSTKAV
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS
Arabidopsis Description
CYTB5-DCytochrome B5 isoform D [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWT2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.