Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, unclear, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- vacuole 1
- endoplasmic reticulum 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
26371478
unclear: 26455813 endoplasmic reticulum: 29145071 |
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g090000.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48810.1 | Solyc01g090000.1.1 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003091 | Potato | cytosol | 96.3 | 96.3 |
| Solyc09g061230.2.1 | Tomato | cytosol | 83.7 | 84.96 |
| Solyc06g083440.2.1 | Tomato | cytosol | 82.22 | 83.46 |
| VIT_07s0005g06290.t01 | Wine grape | cytosol | 80.0 | 81.2 |
| KRG99780 | Soybean | cytosol | 71.85 | 70.29 |
| CDX85364 | Canola | cytosol | 71.11 | 69.57 |
| CDX86279 | Canola | cytosol | 71.11 | 69.57 |
| Bra037461.1-P | Field mustard | cytosol | 70.37 | 68.84 |
| AT5G48810.1 | Thale cress | cytosol | 71.11 | 68.57 |
| KRH46744 | Soybean | endoplasmic reticulum | 70.37 | 66.9 |
| CDY19937 | Canola | cytosol | 68.89 | 66.43 |
| CDY00045 | Canola | cytosol | 68.89 | 66.43 |
| Bra036160.1-P | Field mustard | cytosol | 68.89 | 66.43 |
| Solyc06g053170.2.1 | Tomato | cytosol, plastid | 16.3 | 56.41 |
| Solyc12g098320.1.1 | Tomato | cytosol | 26.67 | 50.7 |
| Solyc06g053180.2.1 | Tomato | plastid | 30.37 | 48.24 |
| Solyc03g082600.2.1 | Tomato | plastid | 65.93 | 46.84 |
| Solyc05g012080.2.1 | Tomato | cytosol, plastid | 39.26 | 39.85 |
| Solyc12g008470.1.1 | Tomato | mitochondrion | 23.7 | 38.1 |
| Solyc04g078140.2.1 | Tomato | cytosol | 34.81 | 31.76 |
| Zm00001d035685_P001 | Maize | mitochondrion | 35.56 | 30.97 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 |
| InterPro:IPR001199 | InterPro:IPR036400 | UniProt:K4C3H3 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 |
| PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF69 | SMART:SM01117 | SUPFAM:SSF55856 | EnsemblPlantsGene:Solyc06g007930.2 |
| EnsemblPlants:Solyc06g007930.2.1 | TMHMM:TMhelix | UniParc:UPI0002766337 | : | : | : |
Description
No Description!
Coordinates
chr6:+:1803614..1806403
Molecular Weight (calculated)
14884.5 Da
IEP (calculated)
4.551
GRAVY (calculated)
-0.260
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSETKVYTL QEVAPHNNAK DCWLVISGKV YDVTKFLDDH PGGDEVLLAA TGKDATDDFE DVGHSSSARA MLDEYYVGDI DSATIPTKKA YTPPNQPHYN
101: QDNTSEFIIK LLQFLVPLII LGVAVGIRFY TKQSS
101: QDNTSEFIIK LLQFLVPLII LGVAVGIRFY TKQSS
001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
Arabidopsis Description
CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.