Factsheet for Solyc05g012080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
plastid 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26340.1	Solyc01g090000.1.1	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072748	Potato	cytosol	97.74	97.74
VIT_01s0011g00210.t01	Wine grape	cytosol	72.18	71.64
AT1G26340.1	Thale cress	cytosol	69.92	68.89
Bra024721.1-P	Field mustard	cytosol	68.42	67.41
CDX85016	Canola	cytosol	68.42	67.41
CDY16153	Canola	cytosol	68.42	67.41
KRH53553	Soybean	cytosol	60.15	66.12
TraesCS5A01G391900.1	Wheat	cytosol	63.91	62.96
EER93435	Sorghum	cytosol	61.65	61.65
TraesCS5D01G401800.1	Wheat	cytosol	62.41	61.48
GSMUA_Achr2P13570_001	Banana	cytosol	60.9	60.9
TraesCS5B01G396800.1	Wheat	cytosol	61.65	60.74
Zm00001d034048_P003	Maize	cytosol	58.65	55.71
Zm00001d013257_P002	Maize	plastid	60.15	53.33
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	52.63	46.36
Solyc06g083440.2.1	Tomato	cytosol	39.85	39.85
Solyc06g007930.2.1	Tomato	cytosol, endoplasmic reticulum, plastid, unclear	39.85	39.26
Solyc09g061230.2.1	Tomato	cytosol	37.59	37.59
Solyc12g008470.1.1	Tomato	mitochondrion	23.31	36.9
Solyc12g098320.1.1	Tomato	cytosol	19.55	36.62
Solyc06g053170.2.1	Tomato	cytosol, plastid	10.53	35.9
Solyc04g078140.2.1	Tomato	cytosol	35.34	31.76
Solyc03g082600.2.1	Tomato	plastid	39.85	27.89
Solyc06g053180.2.1	Tomato	plastid	12.78	20.0

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872
InterPro:IPR001199	InterPro:IPR036400	UniProt:K4BXT1	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191
PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF25	SMART:SM01117	SUPFAM:SSF55856	EnsemblPlantsGene:Solyc05g012080.2
EnsemblPlants:Solyc05g012080.2.1	TMHMM:TMhelix	UniParc:UPI00027673E6	:	:	:

Description

Cytochrome b5 isoform A [Source:Projected from Arabidopsis thaliana (AT1G26340) UniProtKB/Swiss-Prot;Acc:Q9FDW8]

Coordinates

chr5:+:5304880..5308084

Molecular Weight (calculated)

14806.6 Da

IEP (calculated)

4.400

GRAVY (calculated)

-0.253

Length

133 amino acids

Sequence
(BLAST)

001: MPTLTKLFTM EEASEHNTKD DCWVVIDGKV YDVSSYLDEH PGGDDVLLGV TGQDATDEFE DAGHSKSARE LMEKFFIGEL DTTSSSIPEL EIVKKAGKDI
101: PQKLMEVTKQ YWFVPVAAVG ISVVLGFLYT RKK

Best Arabidopsis Sequence Match ( AT1G26340.1 )
(BLAST)

001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT

Arabidopsis Description

CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.