Factsheet for Zm00001d013257_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015091_P003
Zm00001d045618_P001
Zm00001d053952_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26340.1	Zm00001d015091_P003	AT5G47120.1	19054355
AT1G26340.1	Zm00001d045618_P001	AT5G47120.1	19054355
AT1G26340.1	Zm00001d053952_P001	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93435	Sorghum	cytosol	85.33	96.24
Zm00001d034048_P003	Maize	cytosol	84.67	90.71
TraesCS5D01G401800.1	Wheat	cytosol	72.0	80.0
TraesCS5A01G391900.1	Wheat	cytosol	72.0	80.0
TraesCS5B01G396800.1	Wheat	cytosol	71.33	79.26
KRH53553	Soybean	cytosol	50.67	62.81
GSMUA_Achr2P13570_001	Banana	cytosol	54.67	61.65
PGSC0003DMT400072748	Potato	cytosol	54.0	60.9
Solyc05g012080.2.1	Tomato	cytosol, plastid	53.33	60.15
Bra024721.1-P	Field mustard	cytosol	53.33	59.26
CDY16153	Canola	cytosol	53.33	59.26
CDX85016	Canola	cytosol	52.67	58.52
VIT_01s0011g00210.t01	Wine grape	cytosol	52.0	58.21
AT1G26340.1	Thale cress	cytosol	52.0	57.78
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	57.33	56.95
Zm00001d011786_P001	Maize	plasma membrane	36.67	40.74
Zm00001d041963_P001	Maize	plasma membrane	36.67	40.74
Zm00001d011081_P001	Maize	plasma membrane, plastid	34.0	38.35
Zm00001d017425_P001	Maize	cytosol	32.0	34.53
Zm00001d023978_P001	Maize	cytosol	27.33	31.3
Zm00001d032442_P002	Maize	cytosol	24.0	25.9
Zm00001d035685_P001	Maize	mitochondrion	25.33	24.52
Zm00001d013839_P001	Maize	plasma membrane	29.33	24.18
Zm00001d032266_P001	Maize	endoplasmic reticulum, extracellular	18.67	23.73

Protein Annotations

EntrezGene:103625878	MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	UniProt:A0A1D6GGW7	ProteinID:AQK62782.1	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173
PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF25	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00084481D6	EnsemblPlantsGene:Zm00001d013257	EnsemblPlants:Zm00001d013257_P002	EnsemblPlants:Zm00001d013257_T002
SEG:seg	:	:	:	:	:

Description

Cytochrome b5

Coordinates

chr5:-:7187559..7188963

Molecular Weight (calculated)

16673.7 Da

IEP (calculated)

4.351

GRAVY (calculated)

-0.231

Length

150 amino acids

Sequence
(BLAST)

001: MPTLTKLYSM KEAALHNTPD DCWVVVDGKI YDVTKYLEDH PGGADVLLEA TGAASLVHFS CTYYPCGKDA TEEFDDAGHS KSAKELMQDY FVGELDSDPT
101: PEIPEMEVFR KEQDTGFARK LMDDVVQYWS IPAAVIGISA VVAILYARRK

Best Arabidopsis Sequence Match ( AT1G26340.1 )
(BLAST)

001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT

Arabidopsis Description

CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.