Factsheet for Zm00001d034048_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015091_P003
Zm00001d045618_P001
Zm00001d053952_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26340.1	Zm00001d015091_P003	AT5G47120.1	19054355
AT1G26340.1	Zm00001d045618_P001	AT5G47120.1	19054355
AT1G26340.1	Zm00001d053952_P001	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93435	Sorghum	cytosol	91.43	96.24
Zm00001d013257_P002	Maize	plastid	90.71	84.67
TraesCS5D01G401800.1	Wheat	cytosol	77.86	80.74
TraesCS5B01G396800.1	Wheat	cytosol	77.86	80.74
TraesCS5A01G391900.1	Wheat	cytosol	77.86	80.74
KRH53553	Soybean	cytosol	52.86	61.16
GSMUA_Achr2P13570_001	Banana	cytosol	57.86	60.9
PGSC0003DMT400072748	Potato	cytosol	56.43	59.4
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	63.57	58.94
Solyc05g012080.2.1	Tomato	cytosol, plastid	55.71	58.65
Bra024721.1-P	Field mustard	cytosol	55.71	57.78
CDY16153	Canola	cytosol	55.71	57.78
CDX85016	Canola	cytosol	55.0	57.04
AT1G26340.1	Thale cress	cytosol	54.29	56.3
VIT_01s0011g00210.t01	Wine grape	cytosol	53.57	55.97
Zm00001d011786_P001	Maize	plasma membrane	38.57	40.0
Zm00001d041963_P001	Maize	plasma membrane	38.57	40.0
Zm00001d011081_P001	Maize	plasma membrane, plastid	36.43	38.35
Zm00001d017425_P001	Maize	cytosol	37.14	37.41
Zm00001d023978_P001	Maize	cytosol	30.0	32.06
Zm00001d032442_P002	Maize	cytosol	28.57	28.78
Zm00001d013839_P001	Maize	plasma membrane	34.29	26.37
Zm00001d032266_P001	Maize	endoplasmic reticulum, extracellular	22.14	26.27
Zm00001d035685_P001	Maize	mitochondrion	27.14	24.52

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	UniProt:A0A1D6L4Z2	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	ProteinID:ONM09427.1	PFAM:PF00173	PRINTS:PR00363
ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF25	SMART:SM01117	SUPFAM:SSF55856
TMHMM:TMhelix	UniParc:UPI000842A943	EnsemblPlantsGene:Zm00001d034048	EnsemblPlants:Zm00001d034048_P003	EnsemblPlants:Zm00001d034048_T003	SEG:seg

Description

Cytochrome b5 isoform A

Coordinates

chr1:+:282392070..282393302

Molecular Weight (calculated)

15426.2 Da

IEP (calculated)

4.197

GRAVY (calculated)

-0.256

Length

140 amino acids

Sequence
(BLAST)

001: MPTLTKLYSM EEAALHNTPD DCWVIVDGKI YDVTKYLEDH PGGADVLLEA TGTACPGKDA TEEFDDAGHS KSAKDLMQDY FIGEVDLDPT PDIPEMEVFR
101: KEQDTGFASK LKDNVVQYWA IPAAVIGISA VVAILYARRK

Best Arabidopsis Sequence Match ( AT1G26340.1 )
(BLAST)

001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT

Arabidopsis Description

CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.