CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89024
EES04425

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26340.1	EER89024	AT5G47120.1	19054355
AT1G26340.1	EES04425	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034048_P003	Maize	cytosol	96.24	91.43
Zm00001d013257_P002	Maize	plastid	96.24	85.33
TraesCS5D01G401800.1	Wheat	cytosol	81.95	80.74
TraesCS5A01G391900.1	Wheat	cytosol	81.95	80.74
TraesCS5B01G396800.1	Wheat	cytosol	81.2	80.0
GSMUA_Achr2P13570_001	Banana	cytosol	63.16	63.16
KRH53553	Soybean	cytosol	57.14	62.81
PGSC0003DMT400072748	Potato	cytosol	62.41	62.41
Solyc05g012080.2.1	Tomato	cytosol, plastid	61.65	61.65
CDY16153	Canola	cytosol	61.65	60.74
Bra024721.1-P	Field mustard	cytosol	61.65	60.74
CDX85016	Canola	cytosol	60.9	60.0
AT1G26340.1	Thale cress	cytosol	60.15	59.26
HORVU5Hr1G095930.3	Barley	endoplasmic reticulum	66.17	58.28
VIT_01s0011g00210.t01	Wine grape	cytosol	58.65	58.21
EES02143	Sorghum	cytosol	40.6	40.0
EES17559	Sorghum	cytosol	39.85	39.85
EER91363	Sorghum	cytosol	35.34	35.07
EES15848	Sorghum	cytosol	37.59	34.01
EER98759	Sorghum	endoplasmic reticulum, extracellular	24.06	27.12
OQU80382	Sorghum	extracellular, vacuole	23.31	26.27
OQU85747	Sorghum	mitochondrion	38.35	23.83

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EntrezGene:8085924	ProteinID:AAO17707.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BS	EnsemblPlants:EER93435	ProteinID:EER93435	ProteinID:EER93435.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009536	GO:GO:0009707
GO:GO:0010319	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	InterPro:IPR001199
InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359
PANTHER:PTHR19359:SF25	UniProt:Q84KI3	SMART:SM01117	EnsemblPlantsGene:SORBI_3001G086300	SUPFAM:SSF55856	unigene:Sbi.8549
TMHMM:TMhelix	UniParc:UPI0000190A0E	RefSeq:XP_002466437.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:6671844..6673247

Molecular Weight (calculated)

14799.5 Da

IEP (calculated)

4.188

GRAVY (calculated)

-0.246

Length

133 amino acids

Sequence
(BLAST)

001: MPTLTKLYSM EEAALHNTPD DCWVVVDGKI YDVTKYLEDH PGGADVLLEA TGKDATEEFD DAGHSKSAKE LMQDYFIGEL DPTPEIPEME VFRKEQDTGF
101: ASKLMDNVVQ YWAIPAAVIG ISAVVAILYA RRK

Best Arabidopsis Sequence Match ( AT1G26340.1 )
(BLAST)

001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT

Arabidopsis Description

CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.