Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26340.1 | CDY25984 | AT5G47120.1 | 19054355 |
| AT1G26340.1 | CDY28973 | AT5G47120.1 | 19054355 |
| AT1G26340.1 | CDY40569 | AT5G47120.1 | 19054355 |
| AT1G26340.1 | CDY43441 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024721.1-P | Field mustard | cytosol | 98.52 | 98.52 |
| CDY16153 | Canola | cytosol | 98.52 | 98.52 |
| AT1G26340.1 | Thale cress | cytosol | 85.93 | 85.93 |
| Solyc05g012080.2.1 | Tomato | cytosol, plastid | 67.41 | 68.42 |
| PGSC0003DMT400072748 | Potato | cytosol | 67.41 | 68.42 |
| VIT_01s0011g00210.t01 | Wine grape | cytosol | 66.67 | 67.16 |
| KRH53553 | Soybean | cytosol | 58.52 | 65.29 |
| TraesCS5B01G396800.1 | Wheat | cytosol | 62.96 | 62.96 |
| EER93435 | Sorghum | cytosol | 60.0 | 60.9 |
| TraesCS5A01G391900.1 | Wheat | cytosol | 60.74 | 60.74 |
| TraesCS5D01G401800.1 | Wheat | cytosol | 60.0 | 60.0 |
| GSMUA_Achr2P13570_001 | Banana | cytosol | 57.78 | 58.65 |
| Zm00001d034048_P003 | Maize | cytosol | 57.04 | 55.0 |
| Zm00001d013257_P002 | Maize | plastid | 58.52 | 52.67 |
| HORVU5Hr1G095930.3 | Barley | endoplasmic reticulum | 50.37 | 45.03 |
| CDX96233 | Canola | cytosol | 44.44 | 44.78 |
| CDY28830 | Canola | cytosol | 44.44 | 44.78 |
| CDY47080 | Canola | cytosol | 42.96 | 43.28 |
| CDY47078 | Canola | nucleus | 37.78 | 43.22 |
| CDY59638 | Canola | cytosol | 41.48 | 41.79 |
| CDX79471 | Canola | cytosol | 41.48 | 41.79 |
| CDX84725 | Canola | cytosol | 40.74 | 41.04 |
| CDY19161 | Canola | cytosol | 40.74 | 41.04 |
| CDY23792 | Canola | cytosol | 40.74 | 41.04 |
| CDY27310 | Canola | cytosol | 40.0 | 40.3 |
| CDY61721 | Canola | cytosol | 40.0 | 40.3 |
| CDX86279 | Canola | cytosol | 40.0 | 39.13 |
| CDY41545 | Canola | cytosol | 38.52 | 38.81 |
| CDY00045 | Canola | cytosol | 40.0 | 38.57 |
| CDY19937 | Canola | cytosol | 40.0 | 38.57 |
| CDX85364 | Canola | cytosol | 39.26 | 38.41 |
| CDX80035 | Canola | cytosol | 37.78 | 38.06 |
| CDY14370 | Canola | cytosol | 43.7 | 37.82 |
| CDY12180 | Canola | cytosol | 41.48 | 35.9 |
| CDY34133 | Canola | endoplasmic reticulum, extracellular, golgi | 29.63 | 32.79 |
| CDY24550 | Canola | extracellular, golgi, vacuole | 28.89 | 32.23 |
| CDY20247 | Canola | mitochondrion | 43.7 | 31.05 |
| CDY61511 | Canola | endoplasmic reticulum, golgi | 19.26 | 30.95 |
| CDY44610 | Canola | endoplasmic reticulum | 19.26 | 30.95 |
| CDY46984 | Canola | endoplasmic reticulum | 29.63 | 30.3 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | GO:A0A078D6W7 | EnsemblPlants:CDX85016 | ProteinID:CDX85016 | ProteinID:CDX85016.1 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0020037 |
| EnsemblPlantsGene:GSBRNA2T00142448001 | InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 |
| PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF25 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix |
| UniParc:UPI0004EC2FB9 | SEG:seg | : | : | : | : |
Description
BnaC05g20390D
Coordinates
chrLK031839:+:1521231..1522154
Molecular Weight (calculated)
15238.1 Da
IEP (calculated)
4.319
GRAVY (calculated)
-0.340
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTLTKIYSM EEVAAHNKQD DCWIVIDGKV YDVTPYMDEH PGGDDVLLAV TGKDATDEFE DAGHSKTARE LMEEYFIGEL DEASLPEIPE LKIYKKEEPK
101: DSVQKLVDLT KQYWLVPVSV ITISVAASVL FSRKK
101: DSVQKLVDLT KQYWLVPVSV ITISVAASVL FSRKK
001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
Arabidopsis Description
CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.