CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79577	cytosol, nucleus
CDX84282	cytosol, nucleus
CDX84628	cytosol, nucleus
CDY15865	cytosol, nucleus
CDY25984	cytosol
CDY28973	cytosol
CDY31640	cytosol, nucleus
CDY40569	cytosol
CDY43441	cytosol
CDY43655	cytosol, nucleus
CDY43657	cytosol, nucleus
CDY46240	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	CDX79577	AT2G34770.1	19054355
AT2G32720.1	CDX84282	AT2G34770.1	19054355
AT2G32720.1	CDX84628	AT2G34770.1	19054355
AT2G32720.1	CDY15865	AT2G34770.1	19054355
AT2G32720.1	CDY31640	AT2G34770.1	19054355
AT2G32720.1	CDY43655	AT2G34770.1	19054355
AT2G32720.1	CDY43657	AT2G34770.1	19054355
AT2G32720.1	CDY46240	AT2G34770.1	19054355
AT2G32720.1	CDX79577	AT2G34770.1	22635113
AT2G32720.1	CDX84282	AT2G34770.1	22635113
AT2G32720.1	CDX84628	AT2G34770.1	22635113
AT2G32720.1	CDY15865	AT2G34770.1	22635113
AT2G32720.1	CDY31640	AT2G34770.1	22635113
AT2G32720.1	CDY43655	AT2G34770.1	22635113
AT2G32720.1	CDY43657	AT2G34770.1	22635113
AT2G32720.1	CDY46240	AT2G34770.1	22635113
AT2G32720.1	CDX79577	AT2G34770.1	22635113
AT2G32720.1	CDX84282	AT2G34770.1	22635113
AT2G32720.1	CDX84628	AT2G34770.1	22635113
AT2G32720.1	CDY15865	AT2G34770.1	22635113
AT2G32720.1	CDY31640	AT2G34770.1	22635113
AT2G32720.1	CDY43655	AT2G34770.1	22635113
AT2G32720.1	CDY43657	AT2G34770.1	22635113
AT2G32720.1	CDY46240	AT2G34770.1	22635113
AT2G32720.1	CDY25984	AT5G47120.1	19054355
AT2G32720.1	CDY28973	AT5G47120.1	19054355
AT2G32720.1	CDY40569	AT5G47120.1	19054355
AT2G32720.1	CDY43441	AT5G47120.1	19054355
AT2G32720.1	CDY25984	AT5G47120.1	19054355
AT2G32720.1	CDY28973	AT5G47120.1	19054355
AT2G32720.1	CDY40569	AT5G47120.1	19054355
AT2G32720.1	CDY43441	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021809.1-P	Field mustard	cytosol	100.0	100.0
CDY23792	Canola	cytosol	99.25	99.25
CDX79471	Canola	cytosol	96.27	96.27
AT2G32720.1	Thale cress	cytosol	94.78	94.78
CDX84725	Canola	cytosol	94.78	94.78
CDY59638	Canola	cytosol	93.28	93.28
CDY12180	Canola	cytosol	94.03	80.77
GSMUA_Achr3P19410_001	Banana	cytosol	76.87	76.87
Os01t0971500-01	Rice	cytosol, plasma membrane	76.87	76.3
EES02143	Sorghum	cytosol	75.37	74.81
TraesCS5D01G152500.1	Wheat	golgi	73.88	73.88
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	73.88	73.88
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	75.37	73.72
Os05t0108800-01	Rice	plasma membrane	75.37	73.72
EES17559	Sorghum	cytosol	73.13	73.68
TraesCS5B01G138200.1	Wheat	cytosol, golgi	73.13	73.13
TraesCS5A01G138900.1	Wheat	cytosol, golgi	73.13	73.13
GSMUA_Achr6P06700_001	Banana	cytosol	73.13	73.13
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	74.63	72.99
CDY28830	Canola	cytosol	65.67	65.67
CDX96233	Canola	cytosol	65.67	65.67
CDX85364	Canola	cytosol	67.16	65.22
CDX86279	Canola	cytosol	67.16	65.22
CDY19937	Canola	cytosol	65.67	62.86
CDY00045	Canola	cytosol	65.67	62.86
CDY47080	Canola	cytosol	59.7	59.7
HORVU3Hr1G114360.3	Barley	plasma membrane	76.12	58.96
CDY14370	Canola	cytosol	66.42	57.05
Solyc12g098320.1.1	Tomato	cytosol	25.37	47.89
CDY20247	Canola	mitochondrion	65.67	46.32
PGSC0003DMT400019916	Potato	cytosol	47.01	44.37
CDY61721	Canola	cytosol	44.03	44.03
CDY27310	Canola	cytosol	44.03	44.03
CDY47078	Canola	nucleus	37.31	42.37
CDX80035	Canola	cytosol	41.79	41.79
CDY41545	Canola	cytosol	41.04	41.04
CDY16153	Canola	cytosol	41.04	40.74
CDX85016	Canola	cytosol	41.04	40.74
GSMUA_AchrUn_...	Banana	mitochondrion	68.66	37.55
CDY24550	Canola	extracellular, golgi, vacuole	25.37	28.1
CDY34133	Canola	endoplasmic reticulum, extracellular, golgi	25.37	27.87
CDY46984	Canola	endoplasmic reticulum	26.87	27.27
CDY44610	Canola	endoplasmic reticulum	15.67	25.0
CDY61511	Canola	endoplasmic reticulum, golgi	15.67	25.0

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	GO:A0A078G1H8	UniProt:A0A078G1H8	EnsemblPlants:CDY19161	ProteinID:CDY19161
ProteinID:CDY19161.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00006449001
InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255
PANTHER:PTHR19359	PANTHER:PTHR19359:SF69	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00025450FE
SEG:seg	:	:	:	:	:

Description

BnaA04g19010DBnaA04g19010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1H8]

Coordinates

chrLK032092:-:633489..635184

Molecular Weight (calculated)

15069.8 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.392

Length

134 amino acids

Sequence
(BLAST)

001: MGEEAKIFTL SEVSEHNHAH DCWIVINAKV YNVTKFLEDH PGGDEVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKTK YTPPKQPHYN
101: QDKTSEFIIK ILQFLVPIAI LGLAVGIRIY TKSG

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.