CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79471
CDX84725
CDY12180
CDY19161
CDY23792
CDY59638

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34770.1	CDX79471	AT2G32720.1	19054355
AT2G34770.1	CDX84725	AT2G32720.1	19054355
AT2G34770.1	CDY12180	AT2G32720.1	19054355
AT2G34770.1	CDY19161	AT2G32720.1	19054355
AT2G34770.1	CDY23792	AT2G32720.1	19054355
AT2G34770.1	CDY59638	AT2G32720.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43655	Canola	cytosol, plasma membrane, plastid	100.0	100.0
CDX79577	Canola	cytosol, endoplasmic reticulum, plasma membrane	92.41	92.41
CDX84628	Canola	cytosol, endoplasmic reticulum, plastid	91.98	91.98
AT2G34770.1	Thale cress	cytosol	86.08	86.08
CDX84282	Canola	cytosol, endoplasmic reticulum, peroxisome	85.65	82.19
CDY46240	Canola	plasma membrane	81.43	80.42
CDY15865	Canola	plasma membrane	80.59	79.58
CDY31640	Canola	cytosol, golgi, plasma membrane	73.0	79.0
GSMUA_Achr8P14090_001	Banana	cytosol	75.53	75.53
GSMUA_Achr11P...	Banana	cytosol	75.53	75.53
Zm00001d034319_P001	Maize	cytosol	72.57	72.57
EES16419	Sorghum	endoplasmic reticulum	72.15	72.15
EER93353	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	72.15	72.15
TraesCS5D01G024600.1	Wheat	cytosol	71.73	71.73
TraesCS5A01G019200.1	Wheat	cytosol	71.31	71.31
HORVU0Hr1G009740.7	Barley	cytosol	71.31	71.31
TraesCS5B01G016700.1	Wheat	cytosol	70.46	70.17
TraesCS5D01G424200.1	Wheat	cytosol	69.62	69.62
Os12t0628400-01	Rice	cytosol	69.62	69.33
CDX82786	Canola	cytosol	69.2	69.2
CDX79011	Canola	cytosol	69.2	69.2
TraesCS5B01G418800.1	Wheat	cytosol	68.35	68.35
GSMUA_Achr2P10740_001	Banana	cytosol	67.51	67.51
Zm00001d031149_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	72.57	64.42
TraesCS5A01G416500.2	Wheat	endoplasmic reticulum, plasma membrane	69.2	62.6
GSMUA_Achr2P10760_001	Banana	cytosol	17.72	56.0
CDY37569	Canola	cytosol	22.78	51.43
GSMUA_Achr11P...	Banana	extracellular	13.92	50.0
HORVU5Hr1G100890.11	Barley	plastid	64.14	42.94

Protein Annotations

MapMan:5.4.10	GO:A0A078HYM9	UniProt:A0A078HYM9	ProteinID:CDY43655.1	EnsemblPlants:CDY43657	ProteinID:CDY43657
ProteinID:CDY43657.1	InterPro:Fatty_acid_hydroxylase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00077003001	PFAM:PF04116
PANTHER:PTHR12863	PANTHER:PTHR12863:SF2	TMHMM:TMhelix	UniParc:UPI0004EDB099	:	:

Description

BnaA04g20340DBnaA04g20340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYM9]

Coordinates

chrLK032564:-:88836..91107

Molecular Weight (calculated)

27665.0 Da

IEP (calculated)

9.485

GRAVY (calculated)

0.139

Length

237 amino acids

Sequence
(BLAST)

001: MVAQGFTVDL NKPLVFQVGH LGEEYEEWVH QPIVSKEGPR FFKSDFWEFL TLTRWWVVPV IWLPVSLWCI SMSVRMGLSL AEIVPLIALG IFIWTFIEYT
101: LHRFLFHIKT KSYWGNTAHY LLHGCHHKHP MDHLRLVFPP TATLILCFPF WNIVKLFTTP SVTPVLFGGG MLGYVMYDVT HYYLHHAQPT KAVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPKREQ

Best Arabidopsis Sequence Match ( AT2G34770.1 )
(BLAST)

001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ

Arabidopsis Description

FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.