CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79471
CDX84725
CDY12180
CDY19161
CDY23792
CDY59638

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34770.1	CDX79471	AT2G32720.1	19054355
AT2G34770.1	CDX84725	AT2G32720.1	19054355
AT2G34770.1	CDY12180	AT2G32720.1	19054355
AT2G34770.1	CDY19161	AT2G32720.1	19054355
AT2G34770.1	CDY23792	AT2G32720.1	19054355
AT2G34770.1	CDY59638	AT2G32720.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46240	Canola	plasma membrane	97.08	97.08
AT2G34770.1	Thale cress	cytosol	82.08	83.12
CDX84628	Canola	cytosol, endoplasmic reticulum, plastid	82.08	83.12
CDX79577	Canola	cytosol, endoplasmic reticulum, plasma membrane	81.25	82.28
CDY43655	Canola	cytosol, plasma membrane, plastid	79.58	80.59
CDY43657	Canola	cytosol, plasma membrane, plastid	79.58	80.59
CDX84282	Canola	cytosol, endoplasmic reticulum, peroxisome	77.5	75.3
GSMUA_Achr8P14090_001	Banana	cytosol	73.33	74.26
GSMUA_Achr11P...	Banana	cytosol	72.92	73.84
CDY31640	Canola	cytosol, golgi, plasma membrane	65.83	72.15
CDX79011	Canola	cytosol	68.75	69.62
EES16419	Sorghum	endoplasmic reticulum	68.75	69.62
CDX82786	Canola	cytosol	68.75	69.62
Zm00001d034319_P001	Maize	cytosol	67.08	67.93
TraesCS5D01G024600.1	Wheat	cytosol	67.08	67.93
HORVU0Hr1G009740.7	Barley	cytosol	67.08	67.93
TraesCS5A01G019200.1	Wheat	cytosol	67.08	67.93
EER93353	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	66.67	67.51
GSMUA_Achr2P10740_001	Banana	cytosol	66.25	67.09
TraesCS5D01G424200.1	Wheat	cytosol	65.83	66.67
Os12t0628400-01	Rice	cytosol	65.83	66.39
TraesCS5B01G016700.1	Wheat	cytosol	65.83	66.39
TraesCS5B01G418800.1	Wheat	cytosol	65.0	65.82
Zm00001d031149_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	68.75	61.8
TraesCS5A01G416500.2	Wheat	endoplasmic reticulum, plasma membrane	65.83	60.31
GSMUA_Achr2P10760_001	Banana	cytosol	16.25	52.0
CDY37569	Canola	cytosol	22.08	50.48
GSMUA_Achr11P...	Banana	extracellular	12.92	46.97
HORVU5Hr1G100890.11	Barley	plastid	62.5	42.37

Protein Annotations

MapMan:5.4.10	GO:A0A078FN40	UniProt:A0A078FN40	EnsemblPlants:CDY15865	ProteinID:CDY15865	ProteinID:CDY15865.1
InterPro:Fatty_acid_hydroxylase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00090221001	PFAM:PF04116	PANTHER:PTHR12863
PANTHER:PTHR12863:SF7	TMHMM:TMhelix	UniParc:UPI0004EDB1BB	SEG:seg	:	:

Description

BnaA04g12460DBnaA04g12460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FN40]

Coordinates

chrLK032059:-:190970..193459

Molecular Weight (calculated)

27673.8 Da

IEP (calculated)

8.597

GRAVY (calculated)

0.148

Length

240 amino acids

Sequence
(BLAST)

001: MVAQGFTVDL DKPLAFQVGH LGEAYDEWVH QPIVTKEGPR FFHNDFWEFL TLTVWWAVPV IWLPVVVWCI SMSGSMGCSF PEVVSLVALG IFIWTFIEYC
101: LHRFLFHMKT KSYWGNTAHY LIHGYHHKHP MDHLRLVFPP ALTAIMCFPL WNLAKLIATP SAAPALFGGG LFGYVMYDLT HYYLHHANPT IPVTKNLKKS
201: HLNHHFRIQD KGYGVTSSLW DIVFGTLPTT KALKREQQKY

Best Arabidopsis Sequence Match ( AT2G34770.1 )
(BLAST)

001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ

Arabidopsis Description

FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.