Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34770.1 | EES02143 | AT2G32720.1 | 19054355 |
| AT2G34770.1 | EES17559 | AT2G32720.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034319_P001 | Maize | cytosol | 94.94 | 94.94 |
| TraesCS5D01G424200.1 | Wheat | cytosol | 83.54 | 83.54 |
| TraesCS5B01G418800.1 | Wheat | cytosol | 82.28 | 82.28 |
| GSMUA_Achr11P... | Banana | cytosol | 79.75 | 79.75 |
| GSMUA_Achr8P14090_001 | Banana | cytosol | 79.32 | 79.32 |
| EES16419 | Sorghum | endoplasmic reticulum | 78.06 | 78.06 |
| TraesCS5A01G416500.2 | Wheat | endoplasmic reticulum, plasma membrane | 83.54 | 75.57 |
| PGSC0003DMT400054396 | Potato | cytosol | 73.42 | 73.73 |
| CDX84628 | Canola | cytosol, endoplasmic reticulum, plastid | 73.42 | 73.42 |
| KRH36837 | Soybean | endoplasmic reticulum, plasma membrane | 73.0 | 73.31 |
| Solyc02g070050.2.1 | Tomato | extracellular | 49.37 | 72.67 |
| CDX79577 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 72.57 | 72.57 |
| CDY43655 | Canola | cytosol, plasma membrane, plastid | 72.15 | 72.15 |
| CDY43657 | Canola | cytosol, plasma membrane, plastid | 72.15 | 72.15 |
| AT2G34770.1 | Thale cress | cytosol | 70.46 | 70.46 |
| Bra005394.1-P | Field mustard | plasma membrane | 68.78 | 68.78 |
| Solyc02g022890.1.1 | Tomato | extracellular | 19.83 | 68.12 |
| KRH11817 | Soybean | cytosol, golgi, plasma membrane | 74.26 | 67.95 |
| CDX84282 | Canola | cytosol, endoplasmic reticulum, peroxisome | 70.04 | 67.21 |
| CDY15865 | Canola | plasma membrane | 67.51 | 66.67 |
| GSMUA_Achr2P10740_001 | Banana | cytosol | 66.67 | 66.67 |
| CDY46240 | Canola | plasma membrane | 67.51 | 66.67 |
| KRH42277 | Soybean | endoplasmic reticulum, plasma membrane | 67.09 | 66.53 |
| KRH58400 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 66.24 | 65.69 |
| CDY31640 | Canola | cytosol, golgi, plasma membrane | 56.96 | 61.64 |
| GSMUA_Achr2P10760_001 | Banana | cytosol | 19.41 | 61.33 |
| PGSC0003DMT400019648 | Potato | plasma membrane | 63.29 | 60.24 |
| VIT_10s0003g05380.t01 | Wine grape | plastid | 73.0 | 58.64 |
| GSMUA_Achr11P... | Banana | extracellular | 15.61 | 56.06 |
| HORVU5Hr1G100890.11 | Barley | plastid | 78.9 | 52.82 |
Protein Annotations
| MapMan:5.4.10 | EntrezGene:8083935 | UniProt:C5WZ24 | EnsemblPlants:EER93353 | ProteinID:EER93353 | ProteinID:EER93353.1 |
| InterPro:Fatty_acid_hydroxylase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006629 | GO:GO:0006631 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016491 | GO:GO:0055114 | GO:GO:0080132 | ProteinID:OQU90895.1 | PFAM:PF04116 |
| PANTHER:PTHR12863 | PANTHER:PTHR12863:SF2 | EnsemblPlantsGene:SORBI_3001G069700 | unigene:Sbi.7804 | TMHMM:TMhelix | UniParc:UPI0001A82BDF |
| RefSeq:XP_002466355.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:5294063..5297012
Molecular Weight (calculated)
27518.6 Da
IEP (calculated)
7.730
GRAVY (calculated)
0.145
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVQEFTVDL NKPLVFQVGH LEERYQEWVH QPIVSKEGPR FFGNDVLEFL TCTKWWAVPT IWLPVVCFMF VKSILMGNTI QDVVLMALFG IFIWTLIEYT
101: LHRFLFHIET KTYWWNTAHY LLHGCHHKHP MDSLRLVFPP TATAILCFPF WNLVAFFATP STTPALFGGG LLGYVMYDCT HYYLHHGQPS TDPAKHLKRY
201: HLSHHFRIQD MGFGITSSLW DAVFGTLPPS MTPGKKN
101: LHRFLFHIET KTYWWNTAHY LLHGCHHKHP MDSLRLVFPP TATAILCFPF WNLVAFFATP STTPALFGGG LLGYVMYDCT HYYLHHGQPS TDPAKHLKRY
201: HLSHHFRIQD MGFGITSSLW DAVFGTLPPS MTPGKKN
001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
Arabidopsis Description
FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.