Factsheet for PGSC0003DMT400054396

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
cytosol 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070050.2.1	Tomato	extracellular	66.95	98.14
GSMUA_Achr11P...	Banana	cytosol	80.51	80.17
GSMUA_Achr8P14090_001	Banana	cytosol	78.81	78.48
KRH36837	Soybean	endoplasmic reticulum, plasma membrane	77.97	77.97
Bra013479.1-P	Field mustard	cytosol	75.85	75.53
CDX79011	Canola	cytosol	75.85	75.53
CDX82786	Canola	cytosol	75.85	75.53
AT4G20870.2	Thale cress	cytosol	75.85	75.53
Zm00001d034319_P001	Maize	cytosol	75.42	75.11
TraesCS5D01G024600.1	Wheat	cytosol	75.42	75.11
EES16419	Sorghum	endoplasmic reticulum	75.0	74.68
TraesCS5A01G019200.1	Wheat	cytosol	75.0	74.68
HORVU0Hr1G009740.7	Barley	cytosol	74.58	74.26
PGSC0003DMT400019648	Potato	plasma membrane	77.97	73.9
TraesCS5B01G016700.1	Wheat	cytosol	74.15	73.53
Os12t0628400-01	Rice	cytosol	74.15	73.53
EER93353	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	73.73	73.42
KRH11817	Soybean	cytosol, golgi, plasma membrane	78.81	71.81
TraesCS5D01G424200.1	Wheat	cytosol	72.03	71.73
TraesCS5B01G418800.1	Wheat	cytosol	71.61	71.31
KRH58400	Soybean	cytosol, endoplasmic reticulum, plasma membrane	71.19	70.29
KRH42277	Soybean	endoplasmic reticulum, plasma membrane	71.19	70.29
GSMUA_Achr2P10740_001	Banana	cytosol	66.95	66.67
Zm00001d031149_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	75.42	66.67
PGSC0003DMT400019647	Potato	cytosol	63.56	63.56
VIT_10s0003g05380.t01	Wine grape	plastid	79.24	63.39
TraesCS5A01G416500.2	Wheat	endoplasmic reticulum, plasma membrane	70.34	63.36
GSMUA_Achr2P10760_001	Banana	cytosol	18.22	57.33
GSMUA_Achr11P...	Banana	extracellular	14.41	51.52
HORVU5Hr1G100890.11	Barley	plastid	67.8	45.2

Protein Annotations

EntrezGene:102595241	MapMan:5.4.10	InterPro:Fatty_acid_hydroxylase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	UniProt:M1BW92
PFAM:PF04116	EnsemblPlantsGene:PGSC0003DMG400021113	PGSC:PGSC0003DMG400021113	EnsemblPlants:PGSC0003DMT400054396	PANTHER:PTHR12863	PANTHER:PTHR12863:SF7
TMHMM:TMhelix	UniParc:UPI0002964A06	RefSeq:XP_006353000.1	:	:	:

Description

Sphingolipid fatty acid alpha hydroxylase [Source:PGSC_GENE;Acc:PGSC0003DMG400021113]

Coordinates

chr2:-:29157241..29163589

Molecular Weight (calculated)

27258.2 Da

IEP (calculated)

9.423

GRAVY (calculated)

0.073

Length

236 amino acids

Sequence
(BLAST)

001: MVAQGFTVDL DKPLVYQVGH LGEAYQEWVH QPIVSKEGPR FFESDFWEFL TRTVWWAIPT IWLPVVCYSI SVSIHMGRTV PEVALMVGFG IFIWTLMEYT
101: LHRFLFHINT RSYWGNTIHY LLHGCHHKHP MDGLRLVFPP AATAILLVPF WNLIKLLATP TTAPALFGGG LLGYVMYDVT HYYLHHGQPT VEVPKNLKKY
201: HLNHHFRIQN KGFGITSSFW DKVFGTLPHS KSAKNR

Best Arabidopsis Sequence Match ( AT4G20870.2 )
(BLAST)

001: MVAERYTVDL NKPLVFQVGH LGEEYQEWIH QPIVCVEGPR FFESDFWEFL TRTVWWAIPT IWLPVVCYVL SISASKGLTF PQIGLIVAFG VLTWTLLEYT
101: LHRFLFHIQT KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS

Arabidopsis Description

FAH2Dihydroceramide fatty acyl 2-hydroxylase FAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.