Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- endoplasmic reticulum 2
- cytosol 3
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013479.1-P | Field mustard | cytosol | 94.94 | 94.94 |
| CDX79011 | Canola | cytosol | 94.94 | 94.94 |
| CDX82786 | Canola | cytosol | 94.94 | 94.94 |
| PGSC0003DMT400054396 | Potato | cytosol | 75.53 | 75.85 |
| Solyc02g070050.2.1 | Tomato | extracellular | 49.79 | 73.29 |
| KRH36837 | Soybean | endoplasmic reticulum, plasma membrane | 71.31 | 71.61 |
| AT2G34770.1 | Thale cress | cytosol | 69.62 | 69.62 |
| KRH11817 | Soybean | cytosol, golgi, plasma membrane | 70.89 | 64.86 |
| KRH42277 | Soybean | endoplasmic reticulum, plasma membrane | 64.98 | 64.44 |
| KRH58400 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 64.98 | 64.44 |
| PGSC0003DMT400019648 | Potato | plasma membrane | 64.14 | 61.04 |
| Solyc02g022890.1.1 | Tomato | extracellular | 17.72 | 60.87 |
| VIT_10s0003g05380.t01 | Wine grape | plastid | 70.04 | 56.27 |
Protein Annotations
| MapMan:5.4.10 | EntrezGene:827835 | UniProt:A0A178V550 | ProteinID:AEE84370.1 | ProteinID:ANM67123.1 | ArrayExpress:AT4G20870 |
| EnsemblPlantsGene:AT4G20870 | RefSeq:AT4G20870 | TAIR:AT4G20870 | RefSeq:AT4G20870-TAIR-G | EnsemblPlants:AT4G20870.2 | EMBL:AY044315 |
| EMBL:AY058151 | EMBL:AY101538 | Unigene:At.3572 | ProteinID:CAB45882.1 | ProteinID:CAB79087.1 | Symbol:FAH2 |
| InterPro:Fatty_acid_hydroxylase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0006629 | GO:GO:0006631 | GO:GO:0006633 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0055114 |
| RefSeq:NP_001328972.1 | RefSeq:NP_193819.1 | ProteinID:OAP00976.1 | PFAM:PF04116 | PANTHER:PTHR12863 | PANTHER:PTHR12863:SF7 |
| UniProt:Q9SUC5 | TMHMM:TMhelix | UniParc:UPI00000A6505 | SEG:seg | : | : |
Description
FAH2Dihydroceramide fatty acyl 2-hydroxylase FAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUC5]
Coordinates
chr4:-:11174620..11176881
Molecular Weight (calculated)
27312.4 Da
IEP (calculated)
9.209
GRAVY (calculated)
0.126
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAERYTVDL NKPLVFQVGH LGEEYQEWIH QPIVCVEGPR FFESDFWEFL TRTVWWAIPT IWLPVVCYVL SISASKGLTF PQIGLIVAFG VLTWTLLEYT
101: LHRFLFHIQT KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS
101: LHRFLFHIQT KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.