Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g022890.1.1 | Tomato | extracellular | 22.49 | 81.16 |
| PGSC0003DMT400054396 | Potato | cytosol | 73.9 | 77.97 |
| KRH36837 | Soybean | endoplasmic reticulum, plasma membrane | 66.67 | 70.34 |
| GSMUA_Achr11P... | Banana | cytosol | 65.86 | 69.2 |
| GSMUA_Achr8P14090_001 | Banana | cytosol | 65.46 | 68.78 |
| EES16419 | Sorghum | endoplasmic reticulum | 64.26 | 67.51 |
| Zm00001d034319_P001 | Maize | cytosol | 61.85 | 64.98 |
| TraesCS5D01G024600.1 | Wheat | cytosol | 61.85 | 64.98 |
| Bra013479.1-P | Field mustard | cytosol | 61.45 | 64.56 |
| HORVU0Hr1G009740.7 | Barley | cytosol | 61.45 | 64.56 |
| CDX79011 | Canola | cytosol | 61.45 | 64.56 |
| CDX82786 | Canola | cytosol | 61.45 | 64.56 |
| KRH11817 | Soybean | cytosol, golgi, plasma membrane | 67.07 | 64.48 |
| AT4G20870.2 | Thale cress | cytosol | 61.04 | 64.14 |
| TraesCS5A01G019200.1 | Wheat | cytosol | 61.04 | 64.14 |
| EER93353 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 60.24 | 63.29 |
| TraesCS5B01G016700.1 | Wheat | cytosol | 60.24 | 63.03 |
| Os12t0628400-01 | Rice | cytosol | 59.84 | 62.6 |
| KRH42277 | Soybean | endoplasmic reticulum, plasma membrane | 59.04 | 61.51 |
| KRH58400 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 59.04 | 61.51 |
| TraesCS5D01G424200.1 | Wheat | cytosol | 58.23 | 61.18 |
| TraesCS5B01G418800.1 | Wheat | cytosol | 57.43 | 60.34 |
| Zm00001d031149_P001 | Maize | cytosol, endoplasmic reticulum, plasma membrane | 64.26 | 59.93 |
| GSMUA_Achr2P10740_001 | Banana | cytosol | 55.02 | 57.81 |
| TraesCS5A01G416500.2 | Wheat | endoplasmic reticulum, plasma membrane | 58.63 | 55.73 |
| VIT_10s0003g05380.t01 | Wine grape | plastid | 65.86 | 55.59 |
| PGSC0003DMT400019647 | Potato | cytosol | 51.41 | 54.24 |
| HORVU5Hr1G100890.11 | Barley | plastid | 54.62 | 38.42 |
| GSMUA_Achr11P... | Banana | extracellular | 9.24 | 34.85 |
| GSMUA_Achr2P10760_001 | Banana | cytosol | 7.63 | 25.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400019648 | EnsemblPlantsGene:PGSC0003DMG400007596 | EntrezGene:102601993 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR12863 | PANTHER:PTHR12863:SF7 | PGSC:PGSC0003DMG400007596 | TMHMM:TMhelix | UniParc:UPI000294C80C | UniProt:M1ACD2 |
| MapMan:5.4.10 | : | : | : | : | : |
Description
Sphingolipid fatty acid alpha hydroxylase [Source:PGSC_GENE;Acc:PGSC0003DMG400007596]
Coordinates
chr2:-:13344845..13347927
Molecular Weight (calculated)
28483.6 Da
IEP (calculated)
6.794
GRAVY (calculated)
0.240
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAQGFTVDL DKALVFQVGH LGEAYQEWVH QPIVNKEGPR FFESDFWESP SNILLFDRSS IYSGSEIFFF VEQFLTRTVW WAIPVIWLPV VCYSISVSIQ
101: MGVTVPEVAS IVLFGIFVWT LMEYTLHRFL FHIKTKSYWG NTAHYLLHGC HHKHPMDGLR LVFPPAATAI LCVPFWNLIK LMSTPSTAPA LFGGGLLGYV
201: MYDVTHYYLH HAQPTSEVPR NLKIEEVNSA IRRMSRGKVT GLDEIPVEF
101: MGVTVPEVAS IVLFGIFVWT LMEYTLHRFL FHIKTKSYWG NTAHYLLHGC HHKHPMDGLR LVFPPAATAI LCVPFWNLIK LMSTPSTAPA LFGGGLLGYV
201: MYDVTHYYLH HAQPTSEVPR NLKIEEVNSA IRRMSRGKVT GLDEIPVEF
001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
Arabidopsis Description
FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.