Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5B01G418800.1 | Wheat | cytosol | 98.31 | 98.31 |
TraesCS5A01G416500.2 | Wheat | endoplasmic reticulum, plasma membrane | 97.05 | 87.79 |
Zm00001d034319_P001 | Maize | cytosol | 83.97 | 83.97 |
EER93353 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 83.54 | 83.54 |
GSMUA_Achr8P14090_001 | Banana | cytosol | 78.06 | 78.06 |
GSMUA_Achr11P... | Banana | cytosol | 77.22 | 77.22 |
TraesCS5D01G024600.1 | Wheat | cytosol | 75.53 | 75.53 |
PGSC0003DMT400054396 | Potato | cytosol | 71.73 | 72.03 |
KRH36837 | Soybean | endoplasmic reticulum, plasma membrane | 71.31 | 71.61 |
Solyc02g070050.2.1 | Tomato | extracellular | 48.1 | 70.81 |
CDX84628 | Canola | cytosol, endoplasmic reticulum, plastid | 70.46 | 70.46 |
CDX79577 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 70.04 | 70.04 |
CDY43655 | Canola | cytosol, plasma membrane, plastid | 69.62 | 69.62 |
CDY43657 | Canola | cytosol, plasma membrane, plastid | 69.62 | 69.62 |
AT2G34770.1 | Thale cress | cytosol | 68.35 | 68.35 |
Bra005394.1-P | Field mustard | plasma membrane | 67.09 | 67.09 |
GSMUA_Achr2P10740_001 | Banana | cytosol | 66.67 | 66.67 |
CDY46240 | Canola | plasma membrane | 67.09 | 66.25 |
KRH11817 | Soybean | cytosol, golgi, plasma membrane | 72.15 | 66.02 |
CDY15865 | Canola | plasma membrane | 66.67 | 65.83 |
KRH42277 | Soybean | endoplasmic reticulum, plasma membrane | 64.56 | 64.02 |
CDX84282 | Canola | cytosol, endoplasmic reticulum, peroxisome | 66.67 | 63.97 |
Solyc02g022890.1.1 | Tomato | extracellular | 18.57 | 63.77 |
KRH58400 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 63.71 | 63.18 |
GSMUA_Achr2P10760_001 | Banana | cytosol | 19.83 | 62.67 |
HORVU5Hr1G100890.11 | Barley | plastid | 90.72 | 60.73 |
CDY31640 | Canola | cytosol, golgi, plasma membrane | 55.27 | 59.82 |
VIT_10s0003g05380.t01 | Wine grape | plastid | 72.57 | 58.31 |
PGSC0003DMT400019648 | Potato | plasma membrane | 61.18 | 58.23 |
GSMUA_Achr11P... | Banana | extracellular | 15.61 | 56.06 |
Protein Annotations
EnsemblPlants:TraesCS5D01G424200.1 | EnsemblPlantsGene:TraesCS5D01G424200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR12863 | PANTHER:PTHR12863:SF2 | PFAM:PF04116 | TMHMM:TMhelix |
MapMan:5.4.10 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:483701435..483703007
Molecular Weight (calculated)
27363.3 Da
IEP (calculated)
8.865
GRAVY (calculated)
0.128
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKEFTVDL NKPLVFQVGH LEEHYQEWVH QPIVSKEGPR FFANDTMEFL TRTKWWAVPV IWLPVVCWLF AKSVRMGHTI QEVILMALFG VFVWTLIEYS
101: LHRFLFHIET RSYWSNTAHY LIHGCHHKHP MDSLRLVFPP AGAAIICVPF WNVVAFFASP STTPALFAGG LLGYVMYDCT HYYLHHGQPS KDPAKHLKRY
201: HLSHHFRIQD KGFGITSSLW DAVFGTLPSS KIAAKLS
101: LHRFLFHIET RSYWSNTAHY LIHGCHHKHP MDSLRLVFPP AGAAIICVPF WNVVAFFASP STTPALFAGG LLGYVMYDCT HYYLHHGQPS KDPAKHLKRY
201: HLSHHFRIQD KGFGITSSLW DAVFGTLPSS KIAAKLS
001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
Arabidopsis Description
FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.