Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G424200.1 | Wheat | cytosol | 87.79 | 97.05 |
| TraesCS5B01G418800.1 | Wheat | cytosol | 86.26 | 95.36 |
| Zm00001d034319_P001 | Maize | cytosol | 75.95 | 83.97 |
| EER93353 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 75.57 | 83.54 |
| GSMUA_Achr8P14090_001 | Banana | cytosol | 70.23 | 77.64 |
| GSMUA_Achr11P... | Banana | cytosol | 69.47 | 76.79 |
| TraesCS5A01G019200.1 | Wheat | cytosol | 67.18 | 74.26 |
| PGSC0003DMT400054396 | Potato | cytosol | 63.36 | 70.34 |
| CDX84628 | Canola | cytosol, endoplasmic reticulum, plastid | 63.36 | 70.04 |
| KRH36837 | Soybean | endoplasmic reticulum, plasma membrane | 62.98 | 69.92 |
| CDX79577 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 62.98 | 69.62 |
| CDY43655 | Canola | cytosol, plasma membrane, plastid | 62.6 | 69.2 |
| CDY43657 | Canola | cytosol, plasma membrane, plastid | 62.6 | 69.2 |
| Solyc02g070050.2.1 | Tomato | extracellular | 42.37 | 68.94 |
| AT2G34770.1 | Thale cress | cytosol | 61.45 | 67.93 |
| KRH11817 | Soybean | cytosol, golgi, plasma membrane | 65.65 | 66.41 |
| GSMUA_Achr2P10740_001 | Banana | cytosol | 59.92 | 66.24 |
| CDY15865 | Canola | plasma membrane | 60.31 | 65.83 |
| CDY46240 | Canola | plasma membrane | 60.31 | 65.83 |
| Bra005394.1-P | Field mustard | plasma membrane | 59.54 | 65.82 |
| Solyc02g022890.1.1 | Tomato | extracellular | 17.18 | 65.22 |
| CDX84282 | Canola | cytosol, endoplasmic reticulum, peroxisome | 60.31 | 63.97 |
| KRH42277 | Soybean | endoplasmic reticulum, plasma membrane | 57.25 | 62.76 |
| KRH58400 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 56.49 | 61.92 |
| GSMUA_Achr2P10760_001 | Banana | cytosol | 17.56 | 61.33 |
| HORVU5Hr1G100890.11 | Barley | plastid | 82.06 | 60.73 |
| PGSC0003DMT400019648 | Potato | plasma membrane | 55.73 | 58.63 |
| CDY31640 | Canola | cytosol, golgi, plasma membrane | 48.85 | 58.45 |
| VIT_10s0003g05380.t01 | Wine grape | plastid | 65.27 | 57.97 |
| GSMUA_Achr11P... | Banana | extracellular | 14.12 | 56.06 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G416500.2 | EnsemblPlantsGene:TraesCS5A01G416500 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR12863 | PANTHER:PTHR12863:SF2 | PFAM:PF04116 | TMHMM:TMhelix |
| MapMan:5.4.10 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:605158457..605160217
Molecular Weight (calculated)
30023.6 Da
IEP (calculated)
8.086
GRAVY (calculated)
0.218
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSVLTPM PITSVIVALI GEEWKMVVKE FTVDLNQPLV FQVGHLEEHY QEWVHQPIVS KEGPRFFAND TMEFLTRTKW WAVPVIWLPV VCWLFAKSIR
101: MGHTIQEVIL MALFGVFVWT FIEYALHRFL FHIETKSYWS NTAHYLIHGC HHKHPMDSLR LVFPPAGAAI ICVPFWNVVA FFASPSTTPA LFAGGLLGYV
201: MYDCTHYYLH HGQPSKDPAK HLKRYHLSHH FRIQDKGFGI TSSLWDAVFG TLPSSNIVAK LS
101: MGHTIQEVIL MALFGVFVWT FIEYALHRFL FHIETKSYWS NTAHYLIHGC HHKHPMDSLR LVFPPAGAAI ICVPFWNVVA FFASPSTTPA LFAGGLLGYV
201: MYDCTHYYLH HGQPSKDPAK HLKRYHLSHH FRIQDKGFGI TSSLWDAVFG TLPSSNIVAK LS
001: MVAERYTVDL NKPLVFQVGH LGEEYQEWIH QPIVCVEGPR FFESDFWEFL TRTVWWAIPT IWLPVVCYVL SISASKGLTF PQIGLIVAFG VLTWTLLEYT
101: LHRFLFHIQT KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS
101: LHRFLFHIQT KSYWANTAHY LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT HYYLHHGQPK EPTFKHLKKY
201: HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS
Arabidopsis Description
FAH2Dihydroceramide fatty acyl 2-hydroxylase FAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.