CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum, peroxisome

Predictor Summary:

extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 3
vacuole 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79471
CDX84725
CDY12180
CDY19161
CDY23792
CDY59638

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34770.1	CDX79471	AT2G32720.1	19054355
AT2G34770.1	CDX84725	AT2G32720.1	19054355
AT2G34770.1	CDY12180	AT2G32720.1	19054355
AT2G34770.1	CDY19161	AT2G32720.1	19054355
AT2G34770.1	CDY23792	AT2G32720.1	19054355
AT2G34770.1	CDY59638	AT2G32720.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84628	Canola	cytosol, endoplasmic reticulum, plastid	83.81	87.34
CDX79577	Canola	cytosol, endoplasmic reticulum, plasma membrane	83.4	86.92
CDY43655	Canola	cytosol, plasma membrane, plastid	82.19	85.65
CDY43657	Canola	cytosol, plasma membrane, plastid	82.19	85.65
CDY31640	Canola	cytosol, golgi, plasma membrane	72.47	81.74
AT2G34770.1	Thale cress	cytosol	77.33	80.59
CDY46240	Canola	plasma membrane	76.11	78.33
CDY15865	Canola	plasma membrane	75.3	77.5
GSMUA_Achr11P...	Banana	cytosol	72.06	75.11
GSMUA_Achr8P14090_001	Banana	cytosol	70.85	73.84
EER93353	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	67.21	70.04
Zm00001d034319_P001	Maize	cytosol	66.8	69.62
EES16419	Sorghum	endoplasmic reticulum	66.8	69.62
TraesCS5A01G019200.1	Wheat	cytosol	65.99	68.78
HORVU0Hr1G009740.7	Barley	cytosol	65.99	68.78
TraesCS5D01G024600.1	Wheat	cytosol	65.59	68.35
TraesCS5B01G016700.1	Wheat	cytosol	64.37	66.81
TraesCS5D01G424200.1	Wheat	cytosol	63.97	66.67
Os12t0628400-01	Rice	cytosol	63.97	66.39
CDX79011	Canola	cytosol	63.56	66.24
CDX82786	Canola	cytosol	63.56	66.24
TraesCS5B01G418800.1	Wheat	cytosol	63.16	65.82
GSMUA_Achr2P10740_001	Banana	cytosol	63.16	65.82
Zm00001d031149_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	67.21	62.17
TraesCS5A01G416500.2	Wheat	endoplasmic reticulum, plasma membrane	63.97	60.31
CDY37569	Canola	cytosol	23.89	56.19
GSMUA_Achr2P10760_001	Banana	cytosol	14.98	49.33
GSMUA_Achr11P...	Banana	extracellular	12.15	45.45
HORVU5Hr1G100890.11	Barley	plastid	60.32	42.09

Protein Annotations

MapMan:5.4.10	GO:A0A078D569	EnsemblPlants:CDX84282	ProteinID:CDX84282	ProteinID:CDX84282.1	InterPro:Fatty_acid_hydroxylase
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00141368001
PFAM:PF04116	PANTHER:PTHR12863	PANTHER:PTHR12863:SF7	TMHMM:TMhelix	UniParc:UPI0004EDAF0E	:

Description

BnaC04g10440D

Coordinates

chrLK031836:-:1405844..1409399

Molecular Weight (calculated)

28594.1 Da

IEP (calculated)

8.616

GRAVY (calculated)

0.268

Length

247 amino acids

Sequence
(BLAST)

001: MVAEGFTVDL NKPLVFQVGH LGETYEEWVH QPIVTKKGPR FFHSDFWEFL TLTVWWAVPV IWLPVSVWCI SMSISRGLSL PEIVPLIALG IFIWTLIEYT
101: LHRFLFHIKT KSYWGNTAHY LLHGCHHKHP MDHLRLVFPP AATAVLCFPF WNLVKLFTTL SVTPALFGGG MLGYVMYDIT HYYLHHAHPT RAVTKNLKKY
201: HLSHHFRIQD KGFGITSSLW DIVFEILSEG VSFKPMCLLG QVKDIQH

Best Arabidopsis Sequence Match ( AT2G34770.1 )
(BLAST)

001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ

Arabidopsis Description

FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.