Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59638 | Canola | cytosol | 85.26 | 99.25 |
| Bra005564.1-P | Field mustard | cytosol | 83.97 | 97.76 |
| CDX79471 | Canola | cytosol | 81.41 | 94.78 |
| AT2G32720.1 | Thale cress | cytosol | 81.41 | 94.78 |
| CDX84725 | Canola | cytosol | 80.77 | 94.03 |
| CDY19161 | Canola | cytosol | 80.77 | 94.03 |
| CDY23792 | Canola | cytosol | 80.77 | 94.03 |
| GSMUA_Achr3P19410_001 | Banana | cytosol | 66.67 | 77.61 |
| EES17559 | Sorghum | cytosol | 64.74 | 75.94 |
| Os01t0971500-01 | Rice | cytosol, plasma membrane | 65.38 | 75.56 |
| HORVU5Hr1G045040.1 | Barley | cytosol, plasma membrane | 64.1 | 74.63 |
| GSMUA_Achr6P06700_001 | Banana | cytosol | 64.1 | 74.63 |
| EES02143 | Sorghum | cytosol | 64.1 | 74.07 |
| TraesCS5B01G138200.1 | Wheat | cytosol, golgi | 63.46 | 73.88 |
| TraesCS5A01G138900.1 | Wheat | cytosol, golgi | 63.46 | 73.88 |
| TraesCS5D01G152500.1 | Wheat | golgi | 62.82 | 73.13 |
| TraesCS3D01G529500.1 | Wheat | cytosol, golgi, unclear | 64.1 | 72.99 |
| Os05t0108800-01 | Rice | plasma membrane | 64.1 | 72.99 |
| TraesCS3A01G524000.2 | Wheat | cytosol, golgi, plastid | 63.46 | 72.26 |
| CDX85364 | Canola | cytosol | 58.33 | 65.94 |
| CDX86279 | Canola | cytosol | 58.33 | 65.94 |
| CDY28830 | Canola | cytosol | 55.77 | 64.93 |
| CDX96233 | Canola | cytosol | 55.77 | 64.93 |
| CDY00045 | Canola | cytosol | 57.05 | 63.57 |
| CDY19937 | Canola | cytosol | 57.05 | 63.57 |
| HORVU3Hr1G114360.3 | Barley | plasma membrane | 65.38 | 58.96 |
| CDY47080 | Canola | cytosol | 50.64 | 58.96 |
| CDY14370 | Canola | cytosol | 56.41 | 56.41 |
| CDY20247 | Canola | mitochondrion | 57.05 | 46.84 |
| CDY27310 | Canola | cytosol | 39.1 | 45.52 |
| CDY61721 | Canola | cytosol | 39.1 | 45.52 |
| CDX80035 | Canola | cytosol | 38.46 | 44.78 |
| CDY47078 | Canola | nucleus | 33.33 | 44.07 |
| CDY41545 | Canola | cytosol | 37.82 | 44.03 |
| Solyc12g098320.1.1 | Tomato | cytosol | 19.87 | 43.66 |
| CDY16153 | Canola | cytosol | 35.9 | 41.48 |
| CDX85016 | Canola | cytosol | 35.9 | 41.48 |
| PGSC0003DMT400019916 | Potato | cytosol | 37.18 | 40.85 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 63.46 | 40.41 |
| CDY24550 | Canola | extracellular, golgi, vacuole | 21.15 | 27.27 |
| CDY34133 | Canola | endoplasmic reticulum, extracellular, golgi | 21.15 | 27.05 |
| CDY46984 | Canola | endoplasmic reticulum | 22.44 | 26.52 |
| CDY61511 | Canola | endoplasmic reticulum, golgi | 13.46 | 25.0 |
| CDY44610 | Canola | endoplasmic reticulum | 13.46 | 25.0 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | GO:A0A078FCT5 | UniProt:A0A078FCT5 | EnsemblPlants:CDY12180 | ProteinID:CDY12180 |
| ProteinID:CDY12180.1 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00061189001 |
| InterPro:IPR001199 | InterPro:IPR036400 | PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 |
| PANTHER:PTHR19359 | PANTHER:PTHR19359:SF69 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI0004EE648B |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g12100DBnaC04g12100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCT5]
Coordinates
chrLK032018:+:197082..200349
Molecular Weight (calculated)
17429.7 Da
IEP (calculated)
4.984
GRAVY (calculated)
-0.290
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAGSSSMES VRYWWGIIVA KTMGDEAKIF TLSQVSEHNQ AHDCWIVING KVYDVTKFLE DHPGGDEVLL SSTGKDATDD FEDVGHSESA REMMEQYCVG
101: EIDPTTIPKK TKYTPPKQPH YNQDKTSEFI IKILQFLVPL AILGLAVGIR IYTKSA
101: EIDPTTIPKK TKYTPPKQPH YNQDKTSEFI IKILQFLVPL AILGLAVGIR IYTKSA
001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG
Arabidopsis Description
CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.