CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX78905
CDX89063
CDX89333
CDX94330
CDX98596
CDX99411
CDY01565
CDY25984
CDY28973
CDY40569
CDY41153
CDY43441
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53560.1	CDX67837	AT3G60600.1	21798944
AT5G53560.1	CDX71796	AT3G60600.1	21798944
AT5G53560.1	CDX89063	AT3G60600.1	21798944
AT5G53560.1	CDY41153	AT3G60600.1	21798944
AT5G53560.1	CDY48365	AT3G60600.1	21798944
AT5G53560.1	CDX78905	AT4G19030.1	21798944
AT5G53560.1	CDX98596	AT4G19030.1	21798944
AT5G53560.1	CDX99411	AT4G19030.1	21798944
AT5G53560.1	CDY01565	AT4G19030.1	21798944
AT5G53560.1	CDX89333	AT4G26455.1	21798944
AT5G53560.1	CDX94330	AT4G26455.1	21798944
AT5G53560.1	CDY25984	AT5G47120.1	19054355
AT5G53560.1	CDY28973	AT5G47120.1	19054355
AT5G53560.1	CDY40569	AT5G47120.1	19054355
AT5G53560.1	CDY43441	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022660.1-P	Field mustard	cytosol	100.0	100.0
CDX96233	Canola	cytosol	100.0	100.0
AT5G53560.1	Thale cress	cytosol	92.54	92.54
CDY14370	Canola	cytosol	97.01	83.33
VIT_16s0098g01230.t01	Wine grape	cytosol	82.09	82.09
PGSC0003DMT400047688	Potato	cytosol	80.6	80.6
KRH64355	Soybean	endoplasmic reticulum	82.09	78.57
CDY47080	Canola	cytosol	78.36	78.36
PGSC0003DMT400013956	Potato	cytosol	76.12	76.12
Os10t0518200-01	Rice	plasma membrane, plastid	55.22	71.15
EER91363	Sorghum	cytosol	70.9	70.9
TraesCS1D01G184800.1	Wheat	cytosol	69.4	69.4
TraesCS1A01G181500.1	Wheat	cytosol, golgi	68.66	68.66
CDY20247	Canola	mitochondrion	96.27	67.89
CDY23792	Canola	cytosol	66.42	66.42
CDY19161	Canola	cytosol	65.67	65.67
CDX84725	Canola	cytosol	65.67	65.67
CDX79471	Canola	cytosol	65.67	65.67
CDY59638	Canola	cytosol	64.93	64.93
GSMUA_Achr1P04070_001	Banana	cytosol	61.19	61.65
CDX86279	Canola	cytosol	63.43	61.59
CDX85364	Canola	cytosol	63.43	61.59
CDY19937	Canola	cytosol	61.94	59.29
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	70.9	58.28
CDY00045	Canola	cytosol	60.45	57.86
Solyc03g082600.2.1	Tomato	plastid	80.6	56.84
Zm00001d032442_P002	Maize	cytosol	58.96	56.83
KRH53581	Soybean	endoplasmic reticulum	82.09	56.41
CDY12180	Canola	cytosol	64.93	55.77
GSMUA_Achr11P...	Banana	cytosol	53.73	54.55
CDY47078	Canola	nucleus	47.01	53.39
Zm00001d013839_P001	Maize	plasma membrane	70.9	52.2
CDY61721	Canola	cytosol	48.51	48.51
CDY27310	Canola	cytosol	48.51	48.51
GSMUA_Achr4P27140_001	Banana	cytosol	55.97	48.39
CDX80035	Canola	cytosol	46.27	46.27
HORVU1Hr1G047990.4	Barley	plastid	69.4	46.27
CDY41545	Canola	cytosol	45.52	45.52
CDY16153	Canola	cytosol	45.52	45.19
CDX85016	Canola	cytosol	44.78	44.44
TraesCS1B01G199300.1	Wheat	cytosol	68.66	43.4
CDY34133	Canola	endoplasmic reticulum, extracellular, golgi	25.37	27.87
CDY24550	Canola	extracellular, golgi, vacuole	24.63	27.27
CDY46984	Canola	endoplasmic reticulum	26.12	26.52
CDY44610	Canola	endoplasmic reticulum	14.93	23.81
CDY61511	Canola	endoplasmic reticulum, golgi	14.93	23.81

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	GO:A0A078EA13	UniProt:A0A078EA13	EnsemblPlants:CDY28830	ProteinID:CDY28830
ProteinID:CDY28830.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00041496001
InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255
PANTHER:PTHR19359	PANTHER:PTHR19359:SF22	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI0001BA7AC6

Description

BnaA02g10220DBnaA02g10220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EA13]

Coordinates

chrLK032226:-:522517..523504

Molecular Weight (calculated)

15045.9 Da

IEP (calculated)

4.764

GRAVY (calculated)

-0.348

Length

134 amino acids

Sequence
(BLAST)

001: MASDKKVLGF EEVSQHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMEKYYIGEI DSSSVPKTRT YVAPAQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRQY TKKE

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.