Factsheet for Os10t0518200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 3
plastid 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0125300-01
Os02t0643000-01
Os04t0471300-01
Os04t0534400-01
Os08t0156700-01
Os08t0497900-01
Os09t0481300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53560.1	Os02t0643000-01	AT3G60600.1	21798944
AT5G53560.1	Os04t0534400-01	AT3G60600.1	21798944
AT5G53560.1	Os08t0156700-01	AT3G60600.1	21798944
AT5G53560.1	Os04t0471300-01	AT4G26455.1	21798944
AT5G53560.1	Os08t0497900-01	AT4G26455.1	21798944
AT5G53560.1	Os09t0481300-01	AT4G26455.1	21798944
AT5G53560.1	Os02t0125300-01	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91363	Sorghum	cytosol	83.65	64.93
TraesCS1D01G184800.1	Wheat	cytosol	81.73	63.43
TraesCS1A01G181500.1	Wheat	cytosol, golgi	81.73	63.43
VIT_16s0098g01230.t01	Wine grape	cytosol	72.12	55.97
PGSC0003DMT400013956	Potato	cytosol	72.12	55.97
Bra022660.1-P	Field mustard	cytosol	71.15	55.22
CDX96233	Canola	cytosol	71.15	55.22
CDY28830	Canola	cytosol	71.15	55.22
KRH64355	Soybean	endoplasmic reticulum	74.04	55.0
AT5G53560.1	Thale cress	cytosol	69.23	53.73
PGSC0003DMT400047688	Potato	cytosol	69.23	53.73
GSMUA_Achr1P04070_001	Banana	cytosol	66.35	51.88
Zm00001d032442_P002	Maize	cytosol	67.31	50.36
CDY14370	Canola	cytosol	72.12	48.08
Zm00001d013839_P001	Maize	plasma membrane	83.65	47.8
Os05t0108800-01	Rice	plasma membrane	61.54	46.72
Os01t0971500-01	Rice	cytosol, plasma membrane	60.58	46.67
GSMUA_Achr4P30410_001	Banana	cytosol, extracellular, mitochondrion	72.12	46.01
HORVU1Hr1G047990.4	Barley	plastid	81.73	42.29
GSMUA_Achr11P...	Banana	cytosol	50.96	40.15
KRH53581	Soybean	endoplasmic reticulum	75.0	40.0
TraesCS1B01G199300.1	Wheat	cytosol	80.77	39.62
CDY20247	Canola	mitochondrion	72.12	39.47
GSMUA_Achr4P27140_001	Banana	cytosol	58.65	39.35
Solyc03g082600.2.1	Tomato	plastid	71.15	38.95
Os02t0649800-01	Rice	plasma membrane	50.0	37.68
Os12t0223300-01	Rice	cytosol, peroxisome, plastid	43.27	30.0
Os09t0334600-00	Rice	mitochondrion	21.15	25.0
Os08t0386300-02	Rice	endoplasmic reticulum, extracellular	22.12	19.33

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	UniProt:A0A0P0XWQ8	ProteinID:BAT11676.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005886	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0046872
InterPro:IPR001199	InterPro:IPR036400	EnsemblPlantsGene:Os10g0518200	EnsemblPlants:Os10t0518200-01	PFAM:PF00173	PRINTS:PR00363
ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF22	SMART:SM01117	SUPFAM:SSF55856
TMHMM:TMhelix	UniParc:UPI0000DD9A41	:	:	:	:

Description

Cytochrome b5 domain containing protein. (Os10t0518200-01)

Coordinates

chr10:-:20028820..20029345

Molecular Weight (calculated)

11506.7 Da

IEP (calculated)

4.310

GRAVY (calculated)

-0.238

Length

104 amino acids

Sequence
(BLAST)

001: YDVTSFMDEH PGGDEVLLAV TGKDATNDFE DIGHSESARE MMEKYLIGEI DASTIPVKRT HVTPQQAPGN PDKGDDMLIK ILQFLVPILI LGLAFAIRQY
101: TKSE

Best Arabidopsis Sequence Match ( AT5G53560.1 )
(BLAST)

001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD

Arabidopsis Description

CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.