Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 58.61 | 59.4 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 58.94 | 57.79 |
| OQU81760 | Sorghum | nucleus | 60.6 | 42.96 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 56.95 | 37.23 |
| Zm00001d025667_P001 | Maize | cytosol | 57.95 | 35.86 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 58.61 | 34.71 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 57.28 | 33.92 |
| CDY17403 | Canola | nucleus | 21.85 | 23.91 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 21.52 | 23.55 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 20.86 | 22.58 |
| Solyc07g066170.2.1 | Tomato | nucleus | 23.51 | 21.19 |
| CDY24192 | Canola | plastid | 21.19 | 21.12 |
| GSMUA_Achr10P... | Banana | cytosol | 30.46 | 18.25 |
| Os08t0497900-01 | Rice | nucleus | 26.82 | 17.53 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 30.79 | 15.66 |
| Os09t0481300-01 | Rice | nucleus | 27.15 | 15.56 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 20.53 | 15.54 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 20.53 | 15.5 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 30.46 | 15.46 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 21.19 | 15.24 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 29.47 | 14.5 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 21.19 | 14.48 |
| CDX82542 | Canola | plastid | 20.86 | 14.22 |
| AT5G56210.1 | Thale cress | nucleus | 22.85 | 13.56 |
| PGSC0003DMT400022426 | Potato | nucleus | 26.16 | 13.48 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 22.19 | 12.93 |
| PGSC0003DMT400056956 | Potato | nucleus | 25.17 | 12.71 |
| CDX94330 | Canola | nucleus | 20.53 | 12.63 |
| KRH56393 | Soybean | cytosol | 24.17 | 12.44 |
| KRH62532 | Soybean | endoplasmic reticulum | 23.51 | 12.14 |
| CDX89333 | Canola | nucleus | 19.87 | 12.12 |
| Bra026434.1-P | Field mustard | nucleus | 19.87 | 12.12 |
| AT4G26455.1 | Thale cress | nucleus | 19.54 | 12.07 |
Protein Annotations
| EMBL:AK069769 | EnsemblPlants:Os04t0471300-01 | EnsemblPlantsGene:Os04g0471300 | EntrezGene:4336124 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF7 | ProteinID:BAF14969.1 | ProteinID:BAS89647.1 |
| ProteinID:CAE03056.2 | RefSeq:XP_015633625.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000021C623 | UniProt:Q7XQM6 |
| MapMan:20.4.2.1.2 | : | : | : | : | : |
Description
Similar to H0418A01.6 protein. (Os04t0471300-01)
Coordinates
chr4:-:23544095..23546859
Molecular Weight (calculated)
34335.1 Da
IEP (calculated)
4.197
GRAVY (calculated)
-0.695
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMSYDGDQS EDRQSEEVQS AYKSHGGGVL RGYFNLDRSE EQNEENEWSW IPQDGDPLAE SMSSLQTTQE ALENEMQKLS DLSKELGADN FSSDNRANNA
101: FVSPDEDDVL ETNQKMSHLE QKLEEASNTI REKNSVLSQL QELIDGMHIA TPAERAFDID QLETDLDRQL QEKIEAEIQS LVMLKARQSW QVRTEDQLAL
201: KEHKLSSSGG DNGDGDCDSD NARMMMMVKL RETESKIVKL KEQVEKLEVH ERELFGTTQV LRMQSRTLKI CLFGLLQLVL LFLSLKAFFA QVSDPFDDVV
301: PT
101: FVSPDEDDVL ETNQKMSHLE QKLEEASNTI REKNSVLSQL QELIDGMHIA TPAERAFDID QLETDLDRQL QEKIEAEIQS LVMLKARQSW QVRTEDQLAL
201: KEHKLSSSGG DNGDGDCDSD NARMMMMVKL RETESKIVKL KEQVEKLEVH ERELFGTTQV LRMQSRTLKI CLFGLLQLVL LFLSLKAFFA QVSDPFDDVV
301: PT
001: MFFFSCVCRI ISSTLIIFVD TASPGNNVGG FLRRTLNSLG FCFSCSSVTQ ASSRWIVLGM NESVPDSVED NGNSVPANGL LVLPDNDHEE GGVGSPQRSN
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT
Arabidopsis Description
WIP3WPP domain interacting protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSR4]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.