Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 47.47 | 55.95 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 52.86 | 52.77 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 29.12 | 31.92 |
| Zm00001d005997_P002 | Maize | plastid | 28.79 | 31.78 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 32.15 | 31.11 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 28.28 | 30.83 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 15.66 | 30.79 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 28.45 | 30.62 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 27.95 | 30.4 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 27.78 | 30.11 |
| Os09t0481300-01 | Rice | nucleus | 26.43 | 29.79 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 19.53 | 28.93 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 14.48 | 28.86 |
| Solyc07g066170.2.1 | Tomato | nucleus | 16.16 | 28.66 |
| KRH56393 | Soybean | cytosol | 28.28 | 28.62 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 25.59 | 28.31 |
| KRH62532 | Soybean | endoplasmic reticulum | 27.78 | 28.21 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 25.76 | 28.12 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 14.48 | 27.92 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 25.08 | 27.7 |
| EES14314 | Sorghum | nucleus | 23.57 | 27.67 |
| PGSC0003DMT400022426 | Potato | nucleus | 26.77 | 27.13 |
| Os08t0497900-01 | Rice | nucleus | 21.04 | 27.06 |
| PGSC0003DMT400056956 | Potato | nucleus | 26.77 | 26.59 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 25.25 | 26.27 |
| OQU81760 | Sorghum | nucleus | 18.52 | 25.82 |
| AT4G26455.1 | Thale cress | nucleus | 21.21 | 25.77 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 18.18 | 25.71 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 19.02 | 25.57 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 17.17 | 25.56 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 17.17 | 25.5 |
| CDX82542 | Canola | plastid | 18.86 | 25.28 |
| AT5G56210.1 | Thale cress | nucleus | 21.55 | 25.15 |
| CDX89333 | Canola | nucleus | 20.54 | 24.65 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 21.04 | 24.51 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 19.02 | 24.46 |
| Bra026434.1-P | Field mustard | nucleus | 20.2 | 24.24 |
| CDX94330 | Canola | nucleus | 19.87 | 24.03 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 20.54 | 23.92 |
| CDY24192 | Canola | plastid | 12.12 | 23.76 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 11.11 | 23.66 |
| CDY17403 | Canola | nucleus | 10.61 | 22.83 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 10.61 | 22.83 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 19.7 | 22.59 |
| Zm00001d025667_P001 | Maize | cytosol | 17.85 | 21.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P04120_001 | EnsemblPlants:GSMUA_Achr3T04120_001 | EnsemblPlantsGene:GSMUA_Achr3G04120_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00029628EC |
| UniProt:M0SBN0 | MapMan:20.4.2.1.2 | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G04120_001]
Coordinates
chr3:+:2623078..2626762
Molecular Weight (calculated)
64473.0 Da
IEP (calculated)
5.095
GRAVY (calculated)
-0.552
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLGEIKVE LNGEMGHEEP PRFVSPIEIG GGDPAREDTA CVSPAEVISS PGVVKANDDS LARSPSNPVG SRSGEATQVV PSKPAPLRGY GLKRRRRIRR
101: DTSKDVISNA DSAQILGRRL SHAEPSKARD DNKHMSDGEG EGKGSAASLA SMNIGGTPFL VAPTSLDPEL DFLVTAAGFS IGIDSENSDD HSSKSSTAAS
201: APRLPYEAIG LGRDRSKPRI GGGKGSGHAV QQRGQRAKGG RIDTGKKFRE NRVKNEMENS YSSIESDLMS SNMAFVRVDS MGSNGKQSEK SINFDGEQSD
301: DARLSGEVRS GFYIENGKVG DSSREDLYAH LSGEENNTKS ENNQPGTDLD SFLESIVSLQ LIKEALENEI QNIGGIAKDT ISDDSDNQYE ETEGTSSPSV
401: EAKSAELNQK IGHLEGKLVE AVTNVNAKES KILELEAILK KKERECTNLS FLQEKCKVME VELSNLLEKI IEAEIGYLVM TRTTQSCSVL AEDHISLLEE
501: QRSPSGVPSK MMLTVNSAEN KPMMLRRGAE ELDKDISVTQ EVLRLHGRVF KYSLCLSIET VILCIVFVLF IMQLLPSYNG VTPTNEKKKK KNMV
101: DTSKDVISNA DSAQILGRRL SHAEPSKARD DNKHMSDGEG EGKGSAASLA SMNIGGTPFL VAPTSLDPEL DFLVTAAGFS IGIDSENSDD HSSKSSTAAS
201: APRLPYEAIG LGRDRSKPRI GGGKGSGHAV QQRGQRAKGG RIDTGKKFRE NRVKNEMENS YSSIESDLMS SNMAFVRVDS MGSNGKQSEK SINFDGEQSD
301: DARLSGEVRS GFYIENGKVG DSSREDLYAH LSGEENNTKS ENNQPGTDLD SFLESIVSLQ LIKEALENEI QNIGGIAKDT ISDDSDNQYE ETEGTSSPSV
401: EAKSAELNQK IGHLEGKLVE AVTNVNAKES KILELEAILK KKERECTNLS FLQEKCKVME VELSNLLEKI IEAEIGYLVM TRTTQSCSVL AEDHISLLEE
501: QRSPSGVPSK MMLTVNSAEN KPMMLRRGAE ELDKDISVTQ EVLRLHGRVF KYSLCLSIET VILCIVFVLF IMQLLPSYNG VTPTNEKKKK KNMV
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.