Factsheet for GSMUA_Achr4P10280_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT1G55535.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT1G55535.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT1G55535.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT1G55535.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02350_001	Banana	plasma membrane	64.24	78.54
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	24.83	76.53
VIT_06s0004g00110.t01	Wine grape	mitochondrion	50.0	61.63
TraesCS2D01G242700.1	Wheat	plasma membrane	50.66	60.71
TraesCS2B01G262900.1	Wheat	plasma membrane	50.66	60.71
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	49.01	59.44
Zm00001d019194_P004	Maize	plasma membrane	49.01	58.96
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	48.68	58.57
Zm00001d005229_P001	Maize	plasma membrane	46.03	58.4
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	48.01	58.0
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	47.35	57.89
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	42.05	57.73
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	47.35	56.3
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	47.68	56.25
Bra030853.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	47.68	55.38
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	46.36	53.85
AT3G13420.3	Thale cress	mitochondrion	42.38	48.48
Os07t0223700-00	Rice	plasma membrane	49.01	47.9
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	46.03	43.57
TraesCS2A01G244700.1	Wheat	plasma membrane	48.34	43.32
CDY43992	Canola	mitochondrion, plasma membrane	41.06	41.61
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	41.06	41.61

Protein Annotations

EnsemblPlants:GSMUA_Achr4P10280_001	EnsemblPlants:GSMUA_Achr4T10280_001	EnsemblPlantsGene:GSMUA_Achr4G10280_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002960177	UniProt:M0SMP5	MapMan:35.2

Description

Conserved conserved hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G10280_001]

Coordinates

chr4:+:7468583..7473058

Molecular Weight (calculated)

33947.4 Da

IEP (calculated)

6.654

GRAVY (calculated)

0.502

Length

302 amino acids

Sequence
(BLAST)

001: MPLCSTSLRL RIQSWLRDYD RLQSVAVILI YIQIGCALIG SLGALYNGVL LINLVVALFA LVAIESSSQS LGRTYAVLLF FAIVLDIAWF ILFSRTIWNV
101: TPDQKYGQLF VFSLRLALLM EIVGFSVRFL STFLWIQIYR LGVSTVDNPI NHADYSVRNS FVNPSTHDVA RQNSNSDEIL GGAIYDPTYY SSLFEDAQDK
201: RCMPEGDKQI VHDGLSSPVI EAPKLKSCIG RSFHGIDIDS ALRKPLLSTS LRCYTSLFLS FFWFLAAICE TEYLIFLHVS NSKIFFLDFI IVVCIGDISR
301: GA

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.