Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 64.02 | 57.32 |
| Solyc01g090910.2.1 | Tomato | nucleus | 62.15 | 57.08 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.08 | 56.49 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 63.08 | 56.49 |
| Bra003313.1-P | Field mustard | cytosol | 56.54 | 54.26 |
| GSMUA_Achr1P20230_001 | Banana | cytosol | 58.88 | 53.16 |
| AT2G23830.1 | Thale cress | cytosol | 36.92 | 53.02 |
| CDY41153 | Canola | cytosol | 58.41 | 52.52 |
| CDX71796 | Canola | cytosol | 57.94 | 52.1 |
| Bra007547.1-P | Field mustard | cytosol | 57.48 | 51.68 |
| CDY56247 | Canola | cytosol | 57.94 | 51.67 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 57.48 | 51.46 |
| KRH65384 | Soybean | cytosol | 57.94 | 51.45 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 57.01 | 51.05 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 57.01 | 51.05 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 57.01 | 51.05 |
| CDY57247 | Canola | cytosol | 57.01 | 50.83 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 56.54 | 50.63 |
| CDY48365 | Canola | cytosol | 56.54 | 50.63 |
| KRH76164 | Soybean | endoplasmic reticulum | 57.01 | 50.62 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 56.54 | 50.42 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 56.54 | 50.42 |
| Solyc10g018350.1.1 | Tomato | cytosol | 55.61 | 50.0 |
| GSMUA_Achr11P... | Banana | cytosol | 46.73 | 50.0 |
| AT2G45140.1 | Thale cress | cytosol | 54.67 | 48.95 |
| GSMUA_Achr7P06650_001 | Banana | cytosol | 49.07 | 48.61 |
| AT3G60600.1 | Thale cress | cytosol | 57.94 | 48.44 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 54.21 | 48.33 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 47.2 | 48.33 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 54.21 | 48.13 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 54.21 | 48.13 |
| PGSC0003DMT400066920 | Potato | cytosol | 58.88 | 47.19 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 52.34 | 47.06 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 49.53 | 46.7 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 60.75 | 46.43 |
| Solyc06g034220.2.1 | Tomato | nucleus | 48.6 | 45.81 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 50.93 | 45.8 |
| PGSC0003DMT400076826 | Potato | cytosol | 11.68 | 41.67 |
| Bra035442.1-P | Field mustard | cytosol | 20.56 | 40.74 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 16.36 | 34.31 |
| GSMUA_Achr11P... | Banana | cytosol | 35.51 | 33.04 |
| GSMUA_Achr8P21990_001 | Banana | cytosol | 46.26 | 32.89 |
| GSMUA_Achr10P... | Banana | cytosol | 45.79 | 32.67 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 35.51 | 32.62 |
| GSMUA_Achr3P08840_001 | Banana | cytosol | 33.64 | 30.0 |
| AT1G51270.3 | Thale cress | cytosol | 45.33 | 15.23 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr1G20280_001 |
| EnsemblPlants:GSMUA_Achr1P20280_001 | EnsemblPlants:GSMUA_Achr1T20280_001 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M0S1I6 |
| InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 |
| InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0002965601 | InterPro:VAP | SEG:seg |
Description
MSP domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G20280_001]
Coordinates
chr1:-:15189999..15194662
Molecular Weight (calculated)
23725.7 Da
IEP (calculated)
7.913
GRAVY (calculated)
-0.272
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGDLLDVE PLELKFPFEL NKQISCSLQL SNKTEDFLAF KVKTTNPRKY CVRPNVGIIL PRSTCDVVVT MQAQREAPSD MQCKDKFLLQ SIATSSTTTL
101: NDITQEMFSK EPGKTVDEVK IQVAYVSSPQ PPSNVYEQSE DGGASPGPFS SDKAMALISR LTEEKNSALQ QNSKLHQEVE LMRREIGKRR GGFSFMSLVL
201: IALLAVLVGY LVKK
101: NDITQEMFSK EPGKTVDEVK IQVAYVSSPQ PPSNVYEQSE DGGASPGPFS SDKAMALISR LTEEKNSALQ QNSKLHQEVE LMRREIGKRR GGFSFMSLVL
201: IALLAVLVGY LVKK
001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSIFMFN FSLRDLSWTT RLDIKKTHLR
201: YFSQFFQVCH RQNHVTSSFA FALFKTDFWR
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSIFMFN FSLRDLSWTT RLDIKKTHLR
201: YFSQFFQVCH RQNHVTSSFA FALFKTDFWR
Arabidopsis Description
PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.