Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P04250_001 | Banana | plasma membrane | 77.97 | 76.96 |
| AT4G26550.1 | Thale cress | plasma membrane | 73.57 | 74.22 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 75.77 | 74.14 |
| KRH46429 | Soybean | plasma membrane | 71.81 | 74.09 |
| KRG98435 | Soybean | plasma membrane | 71.37 | 73.64 |
| CDX89326 | Canola | cytosol, peroxisome, plasma membrane | 72.69 | 73.01 |
| CDX94317 | Canola | cytosol, peroxisome, plasma membrane | 72.69 | 73.01 |
| Bra026423.1-P | Field mustard | plasma membrane | 72.25 | 72.57 |
| AT5G56020.1 | Thale cress | plasma membrane | 73.13 | 72.17 |
| CDX92816 | Canola | plasma membrane | 73.57 | 71.98 |
| CDY42730 | Canola | plasma membrane | 73.13 | 71.24 |
| PGSC0003DMT400057335 | Potato | plasma membrane | 71.37 | 69.53 |
| Solyc07g065850.2.1 | Tomato | plasma membrane | 70.93 | 69.1 |
| CDY06543 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 30.4 | 46.62 |
| Bra019100.1-P | Field mustard | cytosol | 68.72 | 34.51 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P06090_001 | EnsemblPlants:GSMUA_Achr7T06090_001 | EnsemblPlantsGene:GSMUA_Achr7G06090_001 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 |
| PANTHER:PTHR23137 | PANTHER:PTHR23137:SF10 | PFAM:PF04178 | TMHMM:TMhelix | UniParc:UPI000295C4B3 | UniProt:M0TF49 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative Protein transport protein SFT2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G06090_001]
Coordinates
chr7:+:4515837..4521192
Molecular Weight (calculated)
24193.5 Da
IEP (calculated)
9.644
GRAVY (calculated)
0.551
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRTAQAWFS GGPSERDAPP TTSLLADWNS YAASKAVEEG GSSSLAGFDL EAAVRTANDK VAGTFSVVSK GVRELPGSFQ TATSSVPSGK SLMYFGLLLA
101: SGVFLVFIAF TMFLPVMVLM PQKFAICFTL GCALIVGSFF ALKGPRNQLA HMSSRERLPF TLGFVGSMVG TIYVSMVLHS YVLSVLFSVI QVLALAYYAI
201: SYFPGGSAGL KFLSSTLTSS VFRCFGR
101: SGVFLVFIAF TMFLPVMVLM PQKFAICFTL GCALIVGSFF ALKGPRNQLA HMSSRERLPF TLGFVGSMVG TIYVSMVLHS YVLSVLFSVI QVLALAYYAI
201: SYFPGGSAGL KFLSSTLTSS VFRCFGR
001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.