CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73855
CDY47919
CDY52126
CDY56593
CDY67905

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	CDX73855	AT3G11730.1	21798944
AT4G26550.1	CDY47919	AT3G11730.1	21798944
AT4G26550.1	CDY56593	AT3G11730.1	21798944
AT4G26550.1	CDY52126	AT5G58750.1	21798944
AT4G26550.1	CDY67905	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42730	Canola	plasma membrane	97.84	97.42
AT4G26550.1	Thale cress	plasma membrane	89.66	92.44
CDX94317	Canola	cytosol, peroxisome, plasma membrane	89.66	92.04
CDX89326	Canola	cytosol, peroxisome, plasma membrane	89.22	91.59
KRH46429	Soybean	plasma membrane	72.84	76.82
KRG98435	Soybean	plasma membrane	72.84	76.82
GSMUA_Achr7P06090_001	Banana	cytosol, peroxisome, plastid	71.98	73.57
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	73.28	73.28
GSMUA_Achr3P04250_001	Banana	plasma membrane	72.41	73.04
EER88631	Sorghum	plastid	70.26	72.44
PGSC0003DMT400057335	Potato	plasma membrane	70.69	70.39
Solyc07g065850.2.1	Tomato	plasma membrane	70.26	69.96
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	68.1	69.6
Os06t0608600-01	Rice	plasma membrane	68.97	69.26
TraesCS7A01G220800.1	Wheat	plastid	67.24	68.72
TraesCS7A01G381000.1	Wheat	plastid	67.67	68.56
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	66.81	68.28
TraesCS7D01G221300.1	Wheat	golgi	66.81	68.28
EER97654	Sorghum	plasma membrane, plastid	66.81	67.98
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	66.81	67.98
TraesCS7B01G282900.1	Wheat	plastid	63.36	64.76
Zm00001d007053_P001	Maize	plasma membrane	66.38	55.0
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	31.03	48.65
Bra019100.1-P	Field mustard	cytosol	92.67	47.57

Protein Annotations

EnsemblPlants:CDX92816	EnsemblPlantsGene:GSBRNA2T00154645001	GO:A0A078DU64	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	PFAM:PF04178	ProteinID:CDX92816	ProteinID:CDX92816.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EDD72C	MapMan:35.2	:	:	:

Description

BnaC07g40740D

Coordinates

chrLK031873:+:912434..913965

Molecular Weight (calculated)

24698.0 Da

IEP (calculated)

8.041

GRAVY (calculated)

0.524

Length

232 amino acids

Sequence
(BLAST)

001: MSQGWFSLGG SSSADQQQPE QQKSGSSLLA DWNSYAAARD VEEGGGGSGS FGFDIESAVR SANDTVSGTF SVVSKGVRDI PGNLSSATSS MPSGKALMYF
101: GLLLASGVFF IFIAFTMFLP VMVLMPQKFA ICFTLGCGFI IGSFFALRGP QNQLAHMSSM ERLPLTIGFI ATMVGTIYVS MVLHSYILSV VFSVLQVLAL
201: VYYCISYFPG GSSGMRFLSS ALTSSVLRVF GR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.